PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 698aa MW: 80141.3 Da PI: 7.5428

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma76g00950.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	80.1	4e-25	46	134	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Y +YA++vGF vr++ks++s+r++++++r+fvC++eg+++++ + k++r+r +tr gC a+++v k++ gkw+vtkl++eH+H Zosma76g00950.1 46 QYYIAYASRVGFGVRMNKSRRSRRDDTVIMRRFVCTREGFHSKRVIYdDGKKKRKRGTTREGCMAMIEVIKKDYGKWVVTKLVTEHTHL 134 69**************************************9987647889999*******************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-23	46	135	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-29	237	328	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.076	517	553	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-6	526	549	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MSMDISELGD VETDDPLLSP HMHLEGVEIV EPVIGMEFDT DEIAKQYYIA YASRVGFGVR 60 MNKSRRSRRD DTVIMRRFVC TREGFHSKRV IYDDGKKKRK RGTTREGCMA MIEVIKKDYG 120 KWVVTKLVTE HTHLVMFPSN NASNCHGDDP SQTDSMVVFG DCSGGFNNLK NFTRGIRVNP 180 FGEGGEAQDL LEYLKRMQAE NPGFFYALQV DNNNCMTNVF WADAKARTSY AYFGDAIIFD 240 TTYKKTKYMM PFATFRGVNH HLQSVTFGAA LLMDETKGSY VWLFETWLSA MGGRLPSVLV 300 TDRDKAMEGA IGRIFPNTNH QFCKFHILSR CKQKLSDVYL KHASFNRELR DCVNEPQTPE 360 DFETCWQSII SRYGIWDNQW LKSLYEIRER WVPVYLKNSF FPKLSENQRS EDSLNKFFKR 420 NFNTKTSLLA FVTKFEQTLM SQYEEEAQAD CIAVYSKPSL RTPSLIEKHA ADVYTSVVFE 480 KFQTEFVESL GYYAEKIEDG VIGKYHVIKE EGPTKIHVVS FNESDRRLHC SCCKFESSGL 540 LCRHVLRVFF IVGIHVLPDE YILKRWTRNA MTGPFLNENT DDPSLSFHEC LVTWYNDLCH 600 DAIKYGVEGA TSVETYNAAK VALEKAFSDV IEAKSVQKKT QQNVQRLSRM QKLQNKMPLP 660 KLNHKKNMAR VNEDTIRNLK IDPVDGSSAA ILDDVAH*

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MSMDISELGD VETDDPLLSP HMHLEGVEIV EPVIGMEFDT DEIAKQYYIA YASRVGFGVR  60
MNKSRRSRRD DTVIMRRFVC TREGFHSKRV IYDDGKKKRK RGTTREGCMA MIEVIKKDYG  120
KWVVTKLVTE HTHLVMFPSN NASNCHGDDP SQTDSMVVFG DCSGGFNNLK NFTRGIRVNP  180
FGEGGEAQDL LEYLKRMQAE NPGFFYALQV DNNNCMTNVF WADAKARTSY AYFGDAIIFD  240
TTYKKTKYMM PFATFRGVNH HLQSVTFGAA LLMDETKGSY VWLFETWLSA MGGRLPSVLV  300
TDRDKAMEGA IGRIFPNTNH QFCKFHILSR CKQKLSDVYL KHASFNRELR DCVNEPQTPE  360
DFETCWQSII SRYGIWDNQW LKSLYEIRER WVPVYLKNSF FPKLSENQRS EDSLNKFFKR  420
NFNTKTSLLA FVTKFEQTLM SQYEEEAQAD CIAVYSKPSL RTPSLIEKHA ADVYTSVVFE  480
KFQTEFVESL GYYAEKIEDG VIGKYHVIKE EGPTKIHVVS FNESDRRLHC SCCKFESSGL  540
LCRHVLRVFF IVGIHVLPDE YILKRWTRNA MTGPFLNENT DDPSLSFHEC LVTWYNDLCH  600
DAIKYGVEGA TSVETYNAAK VALEKAFSDV IEAKSVQKKT QQNVQRLSRM QKLQNKMPLP  660
KLNHKKNMAR VNEDTIRNLK IDPVDGSSAA ILDDVAH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785327.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0K9NRB7	0.0	A0A0K9NRB7_ZOSMR; FAR1-related sequence 3
STRING	XP_008785327.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-152	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma76g00950.1