PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 198aa MW: 23282.6 Da PI: 10.3548

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma76g00750.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.1	1.3e-17	51	105	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q +Le+ F+ +++++ +e+ LAk l+L rqV vWFqNrRa++k Zosma76g00750.1 51 RKKLRLSKLQSSTLENTFKLHHTLNPKEKMALAKDLKLRPRQVEVWFQNRRARKK 105 6778899**********************************************98 PP
2	HD-ZIP_I/II	113.6	1.3e-36	51	139	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlsk q+++LE++F+ +++L+p++K++la++L+l+prqv+vWFqnrRAR k+k++E+d+e+Lkr +++l+een+rL+ke +L++ Zosma76g00750.1 51 RKKLRLSKLQSSTLENTFKLHHTLNPKEKMALAKDLKLRPRQVEVWFQNRRARKKLKKTEVDCEMLKRYCENLSEENRRLQKELMDLKA 139 69***********************************************************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.131	47	107	IPR001356	Homeobox domain
SMART	SM00389	4.1E-14	49	111	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.17E-17	49	115	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-17	51	105	IPR009057	Homeodomain-like
Pfam	PF00046	5.3E-15	51	105	IPR001356	Homeobox domain
CDD	cd00086	1.04E-12	51	108	No hit	No description
PROSITE pattern	PS00027	0	82	105	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.4E-9	107	139	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.4E-12	107	150	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MESKDLRLTL SLRASSEHST AIDSTSHHRF VQDWMLREKQ KSDQEDGING RKKLRLSKLQ 60 SSTLENTFKL HHTLNPKEKM ALAKDLKLRP RQVEVWFQNR RARKKLKKTE VDCEMLKRYC 120 ENLSEENRRL QKELMDLKAP NRNTNVKPIN LPMQITTCPS CQRRINNDGD FDSFHRQRIS 180 NLYRLPTVDG TNDYCPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	107	RRARKKLKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012827348.1	2e-47	PREDICTED: homeobox-leucine zipper protein HAT4
Refseq	XP_022029719.1	2e-47	homeobox-leucine zipper protein HAT4-like
Swissprot	A2Z1U1	1e-46	HOX11_ORYSI; Homeobox-leucine zipper protein HOX11
Swissprot	Q67UE2	5e-46	HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBL	A0A0K9NP13	1e-144	A0A0K9NP13_ZOSMR; Homeobox-leucine zipper protein HOX3
STRING	Migut.A01145.1.p	7e-47	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6826	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	3e-48	homeobox protein 2

Link Out ? help Back to Top
Phytozome	Zosma76g00750.1