PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma74g00580.1

Common Name

ZOSMA_74G00580

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 526aa MW: 59406.9 Da PI: 7.2468

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma74g00580.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.7	1.1e-14	237	329	3	90
FAR1 3 YneYAkevGFsvrkskskks..krngei..tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+ +GFsvr ++k+ +++g+i +++++ Csk+g+++ t+ +rr++ ++r+gC a++k k+ + +++w+ ++++ +HnH+++ Zosma74g00580.1 237 YYDFASVTGFSVRLGSTKNVvdNESGQIilVMKRLLCSKQGSPSLILPPTNGNRRKNGVSRCGCLASIKFKRLDrSDNWVTDTVNFDHNHPFT 329 999*********9998886644555412689********999999****************9999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-11	237	329	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.0E-6	451	486	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MASPPSFANQ DQPSILQVSP NTNSIFVTPP SYRSQQFSYD HTNTSCNVSL KFRFNSPRCQ 60 TNDNTLVSEE DFSTSSVPHV AASTIFEFDF VRRTSAEIGE SSANMNYGTA KKPNSLNFHF 120 NSSDRHTNVN PTTCSDNVST PLDPDVVCST FFDPEFVQST PAEITESSAE ILSSSANLGC 180 GTAKTFDNYC KQKFSSPVHD HASPDHENDS SSHNQCNKPC PIVGQVFSSY ELVVQSYYDF 240 ASVTGFSVRL GSTKNVVDNE SGQIILVMKR LLCSKQGSPS LILPPTNGNR RKNGVSRCGC 300 LASIKFKRLD RSDNWVTDTV NFDHNHPFTT PSKIRYLPIN RSISHTSKLL FSSFAEVNVP 360 VSQQAAYFSN QLGGVQNMGC MKMDINNMVR DHRIDLKNYD VDLIVDEFEI KKLENNHFFY 420 DLVKDDLGRL KHLFWVDATM IENYKLFRDS VIFDTTYKTN VYSMVFGMFC GVNHHRKTTI 480 FGSAFLRYFF FTFLLKFPLS FTLYHLLLHS FIFFYFVFMG AVTKM*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MASPPSFANQ DQPSILQVSP NTNSIFVTPP SYRSQQFSYD HTNTSCNVSL KFRFNSPRCQ  60
TNDNTLVSEE DFSTSSVPHV AASTIFEFDF VRRTSAEIGE SSANMNYGTA KKPNSLNFHF  120
NSSDRHTNVN PTTCSDNVST PLDPDVVCST FFDPEFVQST PAEITESSAE ILSSSANLGC  180
GTAKTFDNYC KQKFSSPVHD HASPDHENDS SSHNQCNKPC PIVGQVFSSY ELVVQSYYDF  240
ASVTGFSVRL GSTKNVVDNE SGQIILVMKR LLCSKQGSPS LILPPTNGNR RKNGVSRCGC  300
LASIKFKRLD RSDNWVTDTV NFDHNHPFTT PSKIRYLPIN RSISHTSKLL FSSFAEVNVP  360
VSQQAAYFSN QLGGVQNMGC MKMDINNMVR DHRIDLKNYD VDLIVDEFEI KKLENNHFFY  420
DLVKDDLGRL KHLFWVDATM IENYKLFRDS VIFDTTYKTN VYSMVFGMFC GVNHHRKTTI  480
FGSAFLRYFF FTFLLKFPLS FTLYHLLLHS FIFFYFVFMG AVTKM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NRM2	0.0	A0A0K9NRM2_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-29	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma74g00580.1