PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma74g00580.1
Common NameZOSMA_74G00580
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 526aa    MW: 59406.9 Da    PI: 7.2468
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma74g00580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.71.1e-14237329390
             FAR1   3 YneYAkevGFsvrkskskks..krngei..tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                      Y ++A+ +GFsvr  ++k+   +++g+i  +++++ Csk+g+++     t+ +rr++ ++r+gC a++k k+ + +++w+ ++++ +HnH+++
  Zosma74g00580.1 237 YYDFASVTGFSVRLGSTKNVvdNESGQIilVMKRLLCSKQGSPSLILPPTNGNRRKNGVSRCGCLASIKFKRLDrSDNWVTDTVNFDHNHPFT 329
                      999***********9998886644555412689************999999********************9999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-11237329IPR004330FAR1 DNA binding domain
PfamPF105514.0E-6451486IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MASPPSFANQ DQPSILQVSP NTNSIFVTPP SYRSQQFSYD HTNTSCNVSL KFRFNSPRCQ  60
TNDNTLVSEE DFSTSSVPHV AASTIFEFDF VRRTSAEIGE SSANMNYGTA KKPNSLNFHF  120
NSSDRHTNVN PTTCSDNVST PLDPDVVCST FFDPEFVQST PAEITESSAE ILSSSANLGC  180
GTAKTFDNYC KQKFSSPVHD HASPDHENDS SSHNQCNKPC PIVGQVFSSY ELVVQSYYDF  240
ASVTGFSVRL GSTKNVVDNE SGQIILVMKR LLCSKQGSPS LILPPTNGNR RKNGVSRCGC  300
LASIKFKRLD RSDNWVTDTV NFDHNHPFTT PSKIRYLPIN RSISHTSKLL FSSFAEVNVP  360
VSQQAAYFSN QLGGVQNMGC MKMDINNMVR DHRIDLKNYD VDLIVDEFEI KKLENNHFFY  420
DLVKDDLGRL KHLFWVDATM IENYKLFRDS VIFDTTYKTN VYSMVFGMFC GVNHHRKTTI  480
FGSAFLRYFF FTFLLKFPLS FTLYHLLLHS FIFFYFVFMG AVTKM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NRM20.0A0A0K9NRM2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-29FAR1-related sequence 5