PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma70g00660.1
Common NameZOSMA_70G00660
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 268aa    MW: 29685.3 Da    PI: 7.6395
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma70g00660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.53e-332579155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     ++rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+ +gLt++hvkSHLQkYRl
  Zosma70g00660.1 25 RQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGSQGLTIYHVKSHLQKYRL 79
                     58****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8562282IPR017930Myb domain
SuperFamilySSF466897.53E-172479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-312480IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-242680IPR006447Myb domain, plants
PfamPF002499.6E-102778IPR001005SANT/Myb domain
PfamPF143791.6E-22113158IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MEMNGDVAIP YNGGTNQTTH PLTSRQRLRW THELHERFVD AVAQLGGPDR ATPKGVLRVM  60
GSQGLTIYHV KSHLQKYRLA KYLPDSSSDG LKAEKKDSGD LLSNLDNSSS GSQITEAMKL  120
QMEVQRRLHE QLEIQRQLQL RIEAQGKYLK KIMEEQQRLS GVLSEGSRLE ISKPDPIDQC  180
QTSEKNKPCT PTPTSESHLH VKSTNGAGVV DGVLKCLSGA DEDSLSSCHE PLTPDSSYQI  240
VSPSRSPENE KVIKRQRSSI EFGQQVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-222582158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-222582158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-222582158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-222582158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782978.11e-112myb family transcription factor PHL7-like
RefseqXP_008782979.11e-112myb family transcription factor PHL7-like
RefseqXP_026658512.11e-112myb family transcription factor PHL7-like
SwissprotQ9SJW04e-97PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0K9NSK50.0A0A0K9NSK5_ZOSMR; Uncharacterized protein
STRINGXP_008782978.11e-111(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22203896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-72G2-like family protein