PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g02050.1
Common NameZOSMA_6G02050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ZF-HD
Protein Properties Length: 293aa    MW: 32048.8 Da    PI: 7.3436
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g02050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer993.5e-3170122457
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                      rY+eClkNhA+ +GghavDGCgEfm++ geegt ++lkCaAC+CHRnFHR+e 
  Zosma6g02050.1  70 GRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGTLEGLKCAACNCHRNFHRKEA 122
                     59*************************9.999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2457122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.4E-2971121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.2E-2871121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.31372121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.99E-18179252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-30182252IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-25191247IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDFNGHDDGD EEEGEIGNIP PSGGAGSTYV ETPPLPQPHR LNLSSFPSTL ATVNKPEAAA  60
NVPSTPAASG RYRECLKNHA VGIGGHAVDG CGEFMAAGEE GTLEGLKCAA CNCHRNFHRK  120
EALEGVRGGM NVTTKPPSCA FHTHQFSPYY QYHHHMAQPP RLALPSTSGE QDDLSSDPTM  180
VGGGGTTSSG KKRFRTKFTQ EQKNKMLELA DKLGWRMQKH DETSVQQFCA ETGVQRHVLK  240
VWMHNNKLTL GKNPTPTTTT LIQHVPRELH LQDHHQHLPQ HQMRSLGERS VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-261922471873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018830269.12e-74PREDICTED: zinc-finger homeodomain protein 1-like
SwissprotA2Z2593e-71ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0K9NR710.0A0A0K9NR71_ZOSMR; ZF-HD homeobox protein
STRINGXP_006466284.12e-73(Citrus sinensis)
STRINGXP_010266504.12e-73(Nelumbo nucifera)
STRINGXP_006426297.12e-73(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-60homeobox protein 22