PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g01150.1
Common NameZOSMA_6G01150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 398aa    MW: 43849.5 Da    PI: 4.8618
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g01150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.98.5e-33254311158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     ldDgy+WrKYGqK vkg+++prsYY+Ct+++C+vkk+ver+++d + v++tYeg+H+h
  Zosma6g01150.1 254 LDDGYRWRKYGQKIVKGNPNPRSYYKCTFPDCNVKKHVERASDDLTSVVTTYEGKHTH 311
                     59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-34239314IPR003657WRKY domain
SuperFamilySSF1182907.06E-28246314IPR003657WRKY domain
PROSITE profilePS5081133.281249314IPR003657WRKY domain
SMARTSM007741.0E-36254313IPR003657WRKY domain
PfamPF031067.6E-25255311IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGWNNNEGNL SLLGEWPPQT PRTQAFVSTI LGGELPPEEE EDSGNKKRSA VDVDSILDQH  60
TTVVPTIRRQ GVGLADRIAA RNGGFTAPKI NTWEIISSFD NSTDQLSPSA FQLESPVFLF  120
NTLIYPSPTT GKLFSTSTKI AEEAEADVSA IKDPISDENS WSPSVDQPER GGGVATEEEE  180
VNDRVLPELI SNSPVIFSQF NAESVGKRTL LGEESEVKRR RKEEMTQNVT PEESRMSNRD  240
HRVIVQTTSE VDNLDDGYRW RKYGQKIVKG NPNPRSYYKC TFPDCNVKKH VERASDDLTS  300
VVTTYEGKHT HVVPARKTNA HARSKNAISR GTITNSVPRL LPPQSDAPIT CVSDYFTGLR  360
SGSLSGGIEF QSNLDVEQLP LQKGFSCDGG DGLYQTW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-33245315878Probable WRKY transcription factor 4
2lex_A1e-33245315878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NQZ40.0A0A0K9NQZ4_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.13e-39WRKY DNA-binding protein 34