PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g00860.1
Common NameZOSMA_6G00860
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 278aa    MW: 30923.5 Da    PI: 4.9564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g00860.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-101992381054
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++RR+riN+++  L+ l+P+      +K++ +++Le+AveY+k L
  Zosma6g00860.1 199 KKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVEYVKFL 238
                     9******************97.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.399189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-12195250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-14195255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.27E-11198243No hitNo description
PfamPF000105.2E-8199238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MESAGDSQKE VGSTTIPTIP GEEDQDIMSL LFGSTPFLDG SETMDFTSFF WNNDRDVENN  60
LNDWSQTSTN SNLPLPPPPP PHNDIESFYL NDPSGATTVE MNLSVTENVV DKTSTKIDKN  120
ASSAKKKKKP RNDEHPQVTK QSNNSKRRKS DSQMCKSLSG FSNEDDSNMM VDIDEGSSKS  180
KNKVGPGSVL ADPQSIYAKK RRERINERLK ILQNLVPNGT KVDISTMLEE AVEYVKFLKL  240
QIKVLSSDDM WMYAPIAYNG MDSGLDLKRS PQQQKSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126148KKKPRNDEHPQVTKQSNNSKRRK
2198209KKRRERINERLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020242846.15e-47transcription factor bHLH54-like
TrEMBLA0A0K9NT950.0A0A0K9NT95_ZOSMR; Transcription factor bHLH85
STRINGcassava4.1_026804m6e-46(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-46bHLH family protein