PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma6g00010.1
Common NameZOSMA_6G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 435aa    MW: 49994.9 Da    PI: 6.8868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma6g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003798122123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++C+   Cgk F ++s LkrH   H
  Zosma6g00010.1  98 HVCTyqGCGKKFLDSSKLKRHHLIH 122
                     789999***************9988 PP
2zf-C2H216.91.7e-05128152123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp   Cg+ Fs   n+k+H++tH
  Zosma6g00010.1 128 FICPheGCGRAFSLDFNMKSHMKTH 152
                     78**********************9 PP
3zf-C2H220.41.4e-06158182123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     + Cp  dCgk+F + + L+ Hi+ H
  Zosma6g00010.1 158 HICPygDCGKRFAHEYKLQAHIKAH 182
                     68*********************96 PP
4zf-C2H214.10.00014210235123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++C    Cgks+ +++ L+ H+++ H
  Zosma6g00010.1 210 FVCRfkGCGKSYIHRYKLNLHLKSaH 235
                     899999*****************997 PP
5zf-C2H213.90.00016314340123
                     EEET..TTT.EEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCg.ksFsrksnLkrHirt.H 23 
                     y Cp   Cg ks+ +++ L+ H+++ H
  Zosma6g00010.1 314 YHCPyeECGgKSYMQWYKLNLHMKKeH 340
                     89**********************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-126493IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0346993IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.92E-769122No hitNo description
PROSITE profilePS5015710.6166998IPR007087Zinc finger, C2H2
PROSITE patternPS0002807193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-1294118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.81998127IPR007087Zinc finger, C2H2
SMARTSM003550.0298122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SuperFamilySSF576675.59E-11113153No hitNo description
Gene3DG3DSA:3.30.160.601.2E-16119153IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014128152IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.616128157IPR007087Zinc finger, C2H2
PROSITE patternPS000280130152IPR007087Zinc finger, C2H2
SuperFamilySSF576674.67E-8138184No hitNo description
PfamPF138940.0013158183No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6158182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.1E-4158182IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845158187IPR007087Zinc finger, C2H2
PROSITE patternPS000280160183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-7204232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-5206233No hitNo description
PROSITE profilePS501579.494210235IPR007087Zinc finger, C2H2
SMARTSM003550.013210235IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280212236IPR007087Zinc finger, C2H2
SMARTSM003550.15271296IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280273296IPR007087Zinc finger, C2H2
SMARTSM003550.17314340IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MMYDKRSVGR NAPPPFRWVK EWVNQDLIGS DGKLLIQKWV REDKLKSLKE KVDTPEPEPE  60
PEPTTEVLFL CSHDGCGKYF IDVGSLKKHA HIHGEKQHVC TYQGCGKKFL DSSKLKRHHL  120
IHTGTKDFIC PHEGCGRAFS LDFNMKSHMK THLESNYHIC PYGDCGKRFA HEYKLQAHIK  180
AHHEKNAVAN SGKHITLPEK NGSKDENRPF VCRFKGCGKS YIHRYKLNLH LKSAHHIDHL  240
EEDSGGRRNS GMMDHDVDEG SDRDGGTRKK CKCPYEGCGQ SYLHEYKLNL HLKKKHPSHN  300
IIDENGMGGE HDGYHCPYEE CGGKSYMQWY KLNLHMKKEH PDHEMMMEGK NSVSKNPKRS  360
RPSSSRKIEA PPSKLPSLCT MKNQWGSGSG DAREMFEEGE DSEETEEEDR ENMEDDGWMY  420
QQANEDDEET EDED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C4e-32621822120PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026388132.11e-111zinc finger transcription factor YY1-like isoform X2
SwissprotQ2V3L33e-90YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A0K9NR410.0A0A0K9NR41_ZOSMR; Putative zinc finger protein
STRINGXP_008807673.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.14e-90C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]