PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma69g00790.1
Common NameZOSMA_69G00790
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 445aa    MW: 49503.5 Da    PI: 4.9392
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma69g00790.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.24.7e-11241285554
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      + ++ErrRR+r+N+++  Lr+++P+ +      K++ a+iL  A++Y+ +L
  Zosma69g00790.1 241 NLMAERRRRKRLNDKLYLLRSIVPNiS------KMDRASILGDAINYVYEL 285
                      5589*********************66......**************8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-17235307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523236285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-13242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-9242285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-15243299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-11243289No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MKNTPIIIFF FFLLPNINIS TYLPHQLSFF FFFLLPDIKN ISYLSIMSLP TTTNSSDDLR  60
YLQGGFPSFP KTVLQQQEAE GGGDDSWYAP PAPLVFVDSS SCTTSPVIKS FDRKLRVSIP  120
GCGSGLLGAD ISCGVSEGSG RWWNRTSKII LRPLEDAETT IFQKRSRTAA NAVEGEFKSS  180
GFNYEDSSDG VSTAMEKEIS VVKEDDTEEN DGDEDGYYDE DDDYEKGNEN EKKKKKKPAK  240
NLMAERRRRK RLNDKLYLLR SIVPNISKMD RASILGDAIN YVYELERKVN DLRNDLRSLS  300
PTPTPTSTPS SSDFNAGSSS VNNSEPPPPF HSSGQIKDEI TFSTPQSHNQ LPTIDITVKE  360
ENGKLNIHIY SGVLKLPPTF LPSTMQALDD MDLDIQQAVI NCHNGFVLDI YRAQKCNSWV  420
RPNDIKARLL DCATASGFNG SSSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14235289357Transcription factor MYC2
5gnj_B1e-14235289357Transcription factor MYC2
5gnj_E1e-14235289357Transcription factor MYC2
5gnj_F1e-14235289357Transcription factor MYC2
5gnj_G1e-14235289357Transcription factor MYC2
5gnj_I1e-14235289357Transcription factor MYC2
5gnj_M1e-14235289357Transcription factor MYC2
5gnj_N1e-14235289357Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233251KKKKPAKNLMAERRRRKRL
2234250KKKPAKNLMAERRRRKR
3244251ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NRI20.0A0A0K9NRI2_ZOSMR; Transcription factor SCREAM2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.13e-45bHLH family protein