PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma68g00310.1
Common NameZOSMA_68G00310
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 380aa    MW: 41358.5 Da    PI: 8.4073
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma68g00310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.23.8e-383997462
           zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +  +cprCds ntkfCyynnysl+qPr++CkaCrryWt+GG+lrnvP+Ggg+rknkks+
  Zosma68g00310.1 39 DVFNCPRCDSPNTKFCYYNNYSLTQPRHYCKACRRYWTRGGTLRNVPIGGGCRKNKKSK 97
                     6689****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-243893IPR003851Zinc finger, Dof-type
PfamPF027012.7E-324095IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.774195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDSTLPVTVL ANEAAGSNDQ RKGGRRRSVS GLQPPSVEDV FNCPRCDSPN TKFCYYNNYS  60
LTQPRHYCKA CRRYWTRGGT LRNVPIGGGC RKNKKSKSSH YSSSSPPSSS SSSSFTTTPS  120
MDSGSSPFKL FHQLSSSYFN LGTSTELFPS SRFKYSTSTS GCGLLANEFS NISISNSSQG  180
QGVVGARGSP VVSSDLLDGV VNAPDFSQYS ITRNTSMMDN TCALASNINE PSPSINTTQD  240
LYWKLQQQRL GFNIPYGGQG HQTNIITTKE ITSTSTACIH HQNQNQHHRS VSFHAPVYTE  300
SDLSLVPAIN VASFLGDEGM ITTPSNHHHQ YWLNNTDGGG SSNWNNTTRS NNTDENCTDV  360
LKTLKEMHHL ITALPFGSN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NRN10.0A0A0K9NRN1_ZOSMR; Dof zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-33TARGET OF MONOPTEROS 6