PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma67g00070.1 | ||||||||
Common Name | ZOSMA_67G00070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 237aa MW: 26651.3 Da PI: 9.5988 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.6 | 1.1e-19 | 52 | 145 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 +fY +YA++ GF+vrk ++ ++ n+e +kr ++C k+g ++++ ++k+ r+ + rtgC+a++++k+++ +gkw+v+++++ HnH Zosma67g00070.1 52 QFYFKYAHHKGFNVRKGSTVRK--NNELKKRLLYCCKQGLSATKIPLhanlsnSSKKPRKIRNPRTGCEASITLKLNEkTGKWNVHHFNEVHNH 143 6****************98877..8889***********9998866577887677777788899*************99*************** PP FAR1 88 el 89 +l Zosma67g00070.1 144 DL 145 99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.7E-17 | 52 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MLAISDGAHS ENIPATVKSV PIGQLSMVDS TKIESTVPYI GQSFDSVDEG EQFYFKYAHH 60 KGFNVRKGST VRKNNELKKR LLYCCKQGLS ATKIPLHANL SNSSKKPRKI RNPRTGCEAS 120 ITLKLNEKTG KWNVHHFNEV HNHDLIISSK QGFVIIKKEV PTHCRNLIHD METTNNSPAQ 180 KERGVSSELC KLYSRYSNLA NVSKDAEVDA MNYLLEGIEY LEQKHEQPKG KEVKNN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NRW6 | 1e-176 | A0A0K9NRW6_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma67g00070.1 |