PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma674g00010.1
Common NameZOSMA_674G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 183aa    MW: 20322 Da    PI: 7.9519
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma674g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00164769123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C++ F++   L  H  +H
  Zosma674g00010.1 47 FECKTCNRQFPSFQALGGHRASH 69
                      89**********99999998887 PP
2zf-C2H212.70.0003990112123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++Cg  Fs    L  H+r+H
  Zosma674g00010.1  90 HECTICGLEFSLGQALGGHMRRH 112
                       78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.51E-945112No hitNo description
PfamPF139123.0E-134671IPR007087Zinc finger, C2H2
SMARTSM003550.164769IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
PfamPF139127.6E-1089113IPR007087Zinc finger, C2H2
PROSITE profilePS501579.07890112IPR007087Zinc finger, C2H2
SMARTSM003550.1990112IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKRVRSELDI NMAHVLMLLS RSTGGGGGAE YNMSVDTHQQ TSSGRVFECK TCNRQFPSFQ  60
ALGGHRASHK KPRVTDDQNR GRSPTKPRVH ECTICGLEFS LGQALGGHMR RHRVSVDHQN  120
CESQGKEEDK IDDMITKGTI VQVDENEKKK DTLLGLDLNL TPMENDDQIR LLTFGLGLPL  180
VH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436055.23e-47zinc finger protein ZAT1
RefseqXP_006486058.23e-47zinc finger protein ZAT9-like
RefseqXP_018810023.11e-47PREDICTED: zinc finger protein ZAT11-like
RefseqXP_018836539.11e-47PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A0K9NUE71e-132A0A0K9NUE7_ZOSMR; Zinc finger protein
STRINGLus100303303e-50(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.17e-35C2H2 family protein