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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma65g00950.1 | ||||||||
Common Name | ZOSMA_65G00950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 239aa MW: 26266.8 Da PI: 11.1901 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5e-13 | 36 | 83 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+e+ErrRR+riNs +++Lr+l+P+ K++Ka+ L +++ +++Lq Zosma65g00950.1 36 KSHSEAERRRRERINSHLSTLRRLIPNT-----SKMEKAALLAEVISQLRQLQ 83 58*************************7.....6*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.713 | 33 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.67E-4 | 36 | 85 | No hit | No description |
Pfam | PF00010 | 1.3E-10 | 36 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.1E-13 | 37 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-13 | 37 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-12 | 39 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MDFMGFRGGA GLYQSVGRRN GHVGGVAEVR AALALKSHSE AERRRRERIN SHLSTLRRLI 60 PNTSKMEKAA LLAEVISQLR QLQTAAAEVR RRWNVPSDID EITVEEGERV ESSGSSSSTV 120 RSIKATICCD DRPDLLADLK KALESILRLK TVSAEISTVG CRIRFVFILV TTRTSTTTSQ 180 EQEPAAGVIT RSVQQTLKCA LARISSSSSH RRRQNQPDFF SARNPRRISP LESSSSSS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 46 | ERRRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NSL4 | 1e-170 | A0A0K9NSL4_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11011 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 2e-27 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | Zosma65g00950.1 |