PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma64g00040.1
Common NameZOSMA_64G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 693aa    MW: 76328.7 Da    PI: 6.2858
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma64g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-201671156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     +++ +++t+ q++ Le++F+++++p++++r eL++ lgL+ +q+k+WFqNrR+++k
  Zosma64g00040.1 16 KKRYHRHTPRQIHDLEAVFKECPHPDEKQRMELSRDLGLEPKQIKFWFQNRRTQMK 71
                     688999***********************************************998 PP
2START134.41.2e-422404535205
                      HHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEEECTT.... CS
            START   5 eaaqelvkkalaeepgWvkss.esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddke...qWdetlakaetlevissg.... 88 
                       a++el+++++ +ep+W ks    +++ ++++++ ++++   s+ea+r+sg+v+ ++  lv  l+d+++    + + + ka tl+v+ +g    
  Zosma64g00040.1 240 NAMEELIRLVQMDEPLWIKSCtGDSISLDSYRTLFPDRGlkNSVEASRDSGIVFLDPLSLVDLLVDSNKcldMFPTIISKARTLQVLATGnggg 333
                      689******************967777777777767777799**************************66666666666*************** PP

                      ...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
            START  89 ...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                         g+l lm+ e q+lsp+vp R+f+f+Ry +q++ g w i dvSv+   +   s+     ++lpSg +ie++sng s+vtwv h++ +++   
  Zosma64g00040.1 334 grnGTLLLMYEEQQVLSPVVPtREFYFLRYAQQMEVGLWSISDVSVELSPE---SKFQNQPRKLPSGVIIEDMSNGCSRVTWVVHMEISENFSp 424
                      *******************************************88876544...444555569***************************9755 PP

                      .HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
            START 178 .hwllrslvksglaegaktwvatlqrqce 205
                       h+++r lv+sg a+ga++wv+tl+r  e
  Zosma64g00040.1 425 pHEIYRDLVSSGKAFGAQRWVSTLKRKSE 453
                      7************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-19873IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-221278IPR009057Homeodomain-like
PROSITE profilePS5007117.5891373IPR001356Homeobox domain
SMARTSM003891.5E-191477IPR001356Homeobox domain
PfamPF000463.2E-181671IPR001356Homeobox domain
CDDcd000862.86E-181674No hitNo description
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084839.354227457IPR002913START domain
SuperFamilySSF559619.16E-28231453No hitNo description
CDDcd088751.17E-78233453No hitNo description
SMARTSM002341.7E-30236454IPR002913START domain
PfamPF018524.0E-35240453IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-4283419IPR023393START-like domain
SuperFamilySSF559611.56E-16464680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MEIGGDTGVS GKQKKKKRYH RHTPRQIHDL EAVFKECPHP DEKQRMELSR DLGLEPKQIK  60
FWFQNRRTQM KAQHERADNC TLRAENDRIR CENIAIREAL KNIICPTCGV SPMSADTTST  120
SSSSFFDGHN LRLENAHLRE QVDRVSTIAS KYLGRPITQL PPLQPVHLCS LDLSIGTFEH  180
PSIVASSSIH PPSLDLDLDL LPAGGTASSS SPSFQQPPPP PPPLVVSEID RCLMVDIGSN  240
AMEELIRLVQ MDEPLWIKSC TGDSISLDSY RTLFPDRGLK NSVEASRDSG IVFLDPLSLV  300
DLLVDSNKCL DMFPTIISKA RTLQVLATGN GGGGRNGTLL LMYEEQQVLS PVVPTREFYF  360
LRYAQQMEVG LWSISDVSVE LSPESKFQNQ PRKLPSGVII EDMSNGCSRV TWVVHMEISE  420
NFSPPHEIYR DLVSSGKAFG AQRWVSTLKR KSERQDTVGG VPSEEGKISL MRLSQRMVCN  480
FCSSLGSSGN NQKWTHLSRL NDVGVRVTVH RSSDPGQAND MVLSAATSIW VPVDCDTVFS  540
FLRDERSRSQ WDVLSNGNSV QEVAQITNGS NSANKISLLQ QECKLISDNM VILQESFSEA  600
ASGSMVVSAP IDLRSTNLVM SGEDPSYIPL LPSGFSIVPD GRSSRDGSLI TVAFQILVSS  660
LPCAKINVES ITTVNNLIST TVLQIKSALN CQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019704584.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A0K9NSN90.0A0A0K9NSN9_ZOSMR; Homeobox-leucine zipper protein ROC8
STRINGXP_008806630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12