PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma607g00020.1
Common NameZOSMA_607G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 265aa    MW: 29677.3 Da    PI: 7.2958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma607g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008168190123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C+ Cg  F +   L  H+r+H
  Zosma607g00020.1 168 YACSVCGNKFISGQALGGHMRRH 190
                       89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-883106No hitNo description
PfamPF139122.6E-584105IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6484115IPR007087Zinc finger, C2H2
SMARTSM003556084104IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.42E-8163190No hitNo description
Gene3DG3DSA:3.30.160.603.4E-5164190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.9E-10167191IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097168190IPR007087Zinc finger, C2H2
SMARTSM003550.059168190IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDPWRKNICP ENSNQHYVSL SLFLTEDEKL SMEGVVLLHK QPMKKILETR GDAQNNMIFS  60
RNETIGDDSI IENGKAKLEN IHTYGCKTCN KRFLTLQALN DHRHKQSKTM TGSIPYHQYA  120
HNTFNPSRFI DKEGCNLDIS LGSSFSIGSS SMPLSSDCDI AVKKEKVYAC SVCGNKFISG  180
QALGGHMRRH RTVVQPIIRN SPRSTQPSCH FPFDLNPPAP FEKSDLAEPT INSSQPPSPF  240
TSTHTRSFNF SLDDFVEYGD DTVD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NVP80.0A0A0K9NVP8_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-19C2H2 family protein