PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma5g02800.1 | ||||||||
Common Name | ZOSMA_5G02800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 22565.7 Da PI: 8.3982 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.3 | 5.4e-43 | 23 | 120 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfp ++p kf vhk+FGasnv+k+l++l++++r+da++sl++eA++r+rdPvyG+vg+i+ lq+ql++++a+l+ Zosma5g02800.1 23 PCAACKFLRRKCQPDCVFAPYFPPHNPGKFSSVHKVFGASNVTKILNELKPHQRDDAVNSLAFEADMRLRDPVYGCVGLISFLQHQLREVEAQLH 117 7*********************************************************************************************9 PP DUF260 96 llk 98 ++k Zosma5g02800.1 118 HTK 120 887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.36 | 22 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-42 | 23 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MASSVTAAAV AGFPSSSSSS SSPCAACKFL RRKCQPDCVF APYFPPHNPG KFSSVHKVFG 60 ASNVTKILNE LKPHQRDDAV NSLAFEADMR LRDPVYGCVG LISFLQHQLR EVEAQLHHTK 120 LELSMYEKCN DKSTVAAAAA GNGLNILLNH QPVGVGPFQP RINHLMHGSP YHDAGITNNM 180 TPSTNVAAPP TGLHFTFAGV DGRHMFIGPT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-49 | 16 | 126 | 4 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-49 | 16 | 126 | 4 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023888021.1 | 2e-60 | LOB domain-containing protein 6 | ||||
Refseq | XP_023888022.1 | 2e-60 | LOB domain-containing protein 6 | ||||
Refseq | XP_023888023.1 | 2e-60 | LOB domain-containing protein 6 | ||||
Swissprot | Q32SG3 | 4e-57 | LBD6_MAIZE; LOB domain-containing protein 6 | ||||
TrEMBL | A0A0K9NWJ4 | 1e-154 | A0A0K9NWJ4_ZOSMR; LOB domain protein | ||||
STRING | VIT_00s0340g00090.t01 | 2e-57 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 4e-51 | LOB domain-containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Zosma5g02800.1 |