PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

GATA

Protein Properties

Length: 335aa MW: 36150.3 Da PI: 5.8286

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma5g01940.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51	2e-16	219	253	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + +Tp+WR gp g ktLCnaCG++y++ +l Zosma5g01940.1 219 CLHCDAQNTPQWRTGPMGAKTLCNACGVRYKSGRL 253 99*****************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	1.0E-66	6	306	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	12.426	213	249	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.1E-15	213	263	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.09E-15	215	277	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.1E-14	216	251	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	9.35E-13	218	269	No hit	No description
Pfam	PF00320	3.0E-14	219	253	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	219	244	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009416	Biological Process	response to light stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MKSPAEQQML MNNPLENENQ LLGMVEGFFD FSNEEEDGMV EDVATGEAEV EAKAGKSVDS 60 TTAITGVSSV VDFSSNSSGS GSAAGNGDLC HSDELLFLLD ELPDTTDWIS NIVDDSYSTE 120 DIENFQLISG VKSSSSSFTT ANTINSDLSE KPITARARSK RPRMAPLNWA SRIVQRPPTT 180 TAASMVTSSD LSDTPTPAMK LAKVVKKEII TTTADGRRCL HCDAQNTPQW RTGPMGAKTL 240 CNACGVRYKS GRLVPEYRPA ASPTFITTKH SNSHRKVLEL RRKNGVLQHH DQQLISTTTT 300 TPQLFLTHHP HPTTGPPSTA AAVARGGELW QQTI*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250\|UniProtKB:Q8LAU9, ECO:0000269\|PubMed:25265867}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00530	DAP	Transfer from AT5G25830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010924658.1	2e-67	GATA transcription factor 12
Swissprot	P69781	4e-56	GAT12_ARATH; GATA transcription factor 12
TrEMBL	A0A0K9NW99	0.0	A0A0K9NW99_ZOSMR; GATA transcription factor
STRING	XP_008804627.1	2e-66	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3025	31	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25830.1	6e-55	GATA transcription factor 12

Link Out ? help Back to Top
Phytozome	Zosma5g01940.1

Publications ? help Back to Top
Ravindran P,Verma V,Stamm P,Kumar PP A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589]