PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma5g00420.1 | ||||||||
Common Name | ZOSMA_5G00420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | WRKY | ||||||||
Protein Properties | Length: 340aa MW: 37933.1 Da PI: 6.8448 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.3 | 4.3e-30 | 146 | 204 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver++ dp+++++tY+ +Hnh Zosma5g00420.1 146 SDMWAWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNKLDPNIFIVTYTADHNHA 204 79************************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-30 | 131 | 206 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.315 | 140 | 206 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-25 | 143 | 206 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-34 | 145 | 205 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.8E-25 | 147 | 203 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MEEWDWDLQA VVRSCSGGRA TTRKDPPFFI PQPFQLSGEL EEEQRGEKDE KRSGGELELL 60 YKPFFPRSSS EMIHLLHHHH HHHQQQQSTS SSAAISLLNS DAGLTPAKQQ QQQQQQQRQV 120 STTRSKRRKN QQKKVVCQIP ADGLSSDMWA WRKYGQKPIK GSPYPRGYYR CSTSKGCLAR 180 KQVERNKLDP NIFIVTYTAD HNHAMPTHRN SLAGSTRLKF PTSNTSATTT TPAPIDSAGT 240 GGTRTGEENR ALPEYPTSYM SPNTPMTSTS MEEDVAVVAP AVKKEEADEM KDEGTLLISD 300 MEVLDVDDIF FLGLEDLHQP DNFQFSSSPW HTTAAAGGS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-19 | 133 | 207 | 6 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-19 | 133 | 207 | 6 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NW52 | 0.0 | A0A0K9NW52_ZOSMR; Putative WRKY transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5358 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-54 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma5g00420.1 |