PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g00420.1
Common NameZOSMA_5G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 340aa    MW: 37933.1 Da    PI: 6.8448
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.34.3e-30146204259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+++ gC ++k+ver++ dp+++++tY+ +Hnh 
  Zosma5g00420.1 146 SDMWAWRKYGQKPIKGSPYPRGYYRCSTSkGCLARKQVERNKLDPNIFIVTYTADHNHA 204
                     79************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-30131206IPR003657WRKY domain
PROSITE profilePS5081133.315140206IPR003657WRKY domain
SuperFamilySSF1182904.84E-25143206IPR003657WRKY domain
SMARTSM007741.1E-34145205IPR003657WRKY domain
PfamPF031069.8E-25147203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEEWDWDLQA VVRSCSGGRA TTRKDPPFFI PQPFQLSGEL EEEQRGEKDE KRSGGELELL  60
YKPFFPRSSS EMIHLLHHHH HHHQQQQSTS SSAAISLLNS DAGLTPAKQQ QQQQQQQRQV  120
STTRSKRRKN QQKKVVCQIP ADGLSSDMWA WRKYGQKPIK GSPYPRGYYR CSTSKGCLAR  180
KQVERNKLDP NIFIVTYTAD HNHAMPTHRN SLAGSTRLKF PTSNTSATTT TPAPIDSAGT  240
GGTRTGEENR ALPEYPTSYM SPNTPMTSTS MEEDVAVVAP AVKKEEADEM KDEGTLLISD  300
MEVLDVDDIF FLGLEDLHQP DNFQFSSSPW HTTAAAGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19133207680Disease resistance protein RRS1
5w3x_D2e-19133207680Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NW520.0A0A0K9NW52_ZOSMR; Putative WRKY transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-54WRKY family protein