PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma58g00740.1

Common Name

ZOSMA_58G00740

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 485aa MW: 52555.8 Da PI: 7.9651

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma58g00740.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.3	5.7e-08	319	366	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L++l+P + +k Ka L + ++Y++sLq Zosma58g00740.1 319 SHSLAERVRREKISERMNFLQDLVPGC----NKVTGKAVRLDEIINYVQSLQ 366 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.09E-9	313	370	No hit	No description
SuperFamily	SSF47459	3.4E-16	313	384	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.786	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	315	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-5	319	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.2E-7	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDSNGRFLTG SGANLRQASE MNCGTTEHVM QPCFLNLGYW DQSMDQSSLF GSGLTSMVSS 60 PSTAPATAQE SVVLGEVIGR LGSICNSGEI SPQSHSHSPT NSCYVTPLNS PKGLNLPAIS 120 ENLAIPPPPS LPALRMTYLP PFVSDPSFTQ RLPRFSSLGN GGGSQLGIEN IPHIGLIPAR 180 SPTISDAQFG ISRDESTSVS DRPIGGGTCS GDGSNSRKRK AVQKGKTNDF PISSMTMISD 240 TSCKPRNSIQ METMDSDSKR VKCSEAMGRR STKNELNKPK VEPSSSRGGG GGDQKEEKED 300 KSKQDYIHVR ARRGQATDSH SLAERVRREK ISERMNFLQD LVPGCNKVTG KAVRLDEIIN 360 YVQSLQRQVE FLSMKLATVN PWTEFNMESH ACKDIYESHR RGSVAFPSEV STVNADPAFP 420 FVLHTQMQSS TLRKSGGMQL PTFNGFPNFT SPSTQQQVSS DFYDNDLQNI VQMGGNIGPT 480 NQLN*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDSNGRFLTG SGANLRQASE MNCGTTEHVM QPCFLNLGYW DQSMDQSSLF GSGLTSMVSS  60
PSTAPATAQE SVVLGEVIGR LGSICNSGEI SPQSHSHSPT NSCYVTPLNS PKGLNLPAIS  120
ENLAIPPPPS LPALRMTYLP PFVSDPSFTQ RLPRFSSLGN GGGSQLGIEN IPHIGLIPAR  180
SPTISDAQFG ISRDESTSVS DRPIGGGTCS GDGSNSRKRK AVQKGKTNDF PISSMTMISD  240
TSCKPRNSIQ METMDSDSKR VKCSEAMGRR STKNELNKPK VEPSSSRGGG GGDQKEEKED  300
KSKQDYIHVR ARRGQATDSH SLAERVRREK ISERMNFLQD LVPGCNKVTG KAVRLDEIIN  360
YVQSLQRQVE FLSMKLATVN PWTEFNMESH ACKDIYESHR RGSVAFPSEV STVNADPAFP  420
FVLHTQMQSS TLRKSGGMQL PTFNGFPNFT SPSTQQQVSS DFYDNDLQNI VQMGGNIGPT  480
NQLN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007034153.2	8e-99	PREDICTED: transcription factor bHLH62
TrEMBL	A0A0K9NX73	0.0	A0A0K9NX73_ZOSMR; BHLH transcription factor
STRING	EOY05079	4e-97	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-59	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma58g00740.1