PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma58g00370.1
Common NameZOSMA_58G00370
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 223aa    MW: 25359.7 Da    PI: 9.724
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma58g00370.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix30.59.3e-101386275
         trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
                     W+ +e l+L+     ++++ +++ +  ++W  +s+++ +  + r+++qC+ kw++l  ++++ik++e++ + ++
  Zosma58g00370.1 13 WSLHEKLTLVLEIDAVDDEHGSTISSHQKWNIISNHLIALNICRNSTQCRGKWDSLLSEHRAIKDWESRSRYQT 86
                     888888888766667777777777999****************************************9975444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-71383No hitNo description
PROSITE profilePS500907.1081369IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.9E-43676IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MSRFTRSQII PDWSLHEKLT LVLEIDAVDD EHGSTISSHQ KWNIISNHLI ALNICRNSTQ  60
CRGKWDSLLS EHRAIKDWES RSRYQTASTS RSNGGDSYWC LESDKRKDLK LPIEFDRELF  120
GLIEGFINKE VIKTKDHKMV VSEIDSPSSS SLPPSSSSSA SSLSGMQDLY SPPPPVSNSL  180
LLTMLVTSSK KANGGRRRRI GRTKLWRCFE RIAVNYRWMW NA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NUX61e-161A0A0K9NUX6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63532433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.18e-30sequence-specific DNA binding transcription factors