PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma56g00700.1
Common NameZOSMA_56G00700
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 441aa    MW: 49177.2 Da    PI: 5.7901
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma56g00700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.71.1e-096185226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     ++  C+++ r+G+Ck+G +CkF+H+
  Zosma56g00700.1 61 GEQDCNYYIRSGFCKFGMTCKFNHP 85
                     6789********************9 PP
2zf-CCCH39.21.2e-12107131327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++CkF+H++
  Zosma56g00700.1 107 QPECQYYLKTGTCKFGATCKFHHPK 131
                      799********************96 PP
3zf-CCCH39.11.2e-12153177327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  Zosma56g00700.1 153 EPECTYYLRTGECKFGNTCKFHHPQ 177
                      799********************97 PP
4zf-CCCH40.25.8e-13280306127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C f+++tG CkyG++CkF+H++
  Zosma56g00700.1 280 PGEPECVFYMKTGDCKYGATCKFHHPR 306
                      5789*********************96 PP
5zf-CCCH314.2e-10327352227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++lC f+ r+G+Ck+G++CkF H++
  Zosma56g00700.1 327 GEPLCIFYCRYGICKFGPNCKFDHPM 352
                      689*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00125986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5635987IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-66185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-56287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-46585IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14104132IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-10107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6108133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5110130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.732150178IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-6152177IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4156176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699279307IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6279306IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6284309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5285307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854325353IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4325352IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7327352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6329354IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEEGRMTAST AMVYDHDGSM DVMDGGSYSF YPRIVDEDAM WEMNMKAQET MEAGLYPERP  60
GEQDCNYYIR SGFCKFGMTC KFNHPVNRKL AVLAARMKGG YPERIGQPEC QYYLKTGTCK  120
FGATCKFHHP KDKAGIAGRA QLNNMGYPIR PNEPECTYYL RTGECKFGNT CKFHHPQPFN  180
SMVSFNSSSI YPAAHSSTTP DQQSYTGATD WPIARTSYIP SPSWQAPSNY TQMILPQGMM  240
QVPGWNSYPG QFGSFSSPEN NQQQTVGNDQ SRDGIFPERP GEPECVFYMK TGDCKYGATC  300
KFHHPRERLY SLPDCDLNPI GLPLRSGEPL CIFYCRYGIC KFGPNCKFDH PMNTTSMYDL  360
ASPTSIDVPV TLHNKLSPPS RATVLPPSSE GDVEDGNDKL QQLSNQELLE SEKMGSADDD  420
KIEAVVSQGK TGQEQISSFP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010929825.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-169ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0K9NVQ10.0A0A0K9NVQ1_ZOSMR; Zinc finger CCCH domain-containing protein ZFN-like
STRINGXP_008812314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-144zinc finger protein 1