PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 297aa MW: 32808.2 Da PI: 4.1818

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma54g00840.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.1	8.6e-20	81	135	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++t+eq++ Le+ Fe + ++ e++ eL+kklgL+ rqV vWFqNrRa++k+ Zosma54g00840.1 81 KKRRLTPEQVHMLETSFETEIKLEPERKMELSKKLGLQPRQVAVWFQNRRARWKN 135 5678*************************************************95 PP
2	HD-ZIP_I/II	121.1	5.4e-39	80	168	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 ekkrrl+ eqv++LE+sFe+e kLeperK+el+++LglqprqvavWFqnrRAR+k+kqlE+++ +Lk+ yd+l+++++ L +++++L + Zosma54g00840.1 80 EKKRRLTPEQVHMLETSFETEIKLEPERKMELSKKLGLQPRQVAVWFQNRRARWKNKQLETEFCQLKSLYDTLRANHDCLLQNNDSLLA 168 69***************************************************************************999999998864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-20	74	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	76	136	IPR001356	Homeobox domain
SMART	SM00389	3.5E-19	79	140	IPR001356	Homeobox domain
CDD	cd00086	7.97E-19	81	137	No hit	No description
Pfam	PF00046	5.0E-17	81	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.7E-20	82	140	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	107	116	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	111	134	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	116	132	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-7	136	168	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	3.7E-10	149	185	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001558	Biological Process	regulation of cell growth
GO:0009637	Biological Process	response to blue light
GO:0009651	Biological Process	response to salt stress
GO:0009965	Biological Process	leaf morphogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDSSRFGFEY SASGPDNGNV FFVGRSAVLG FPDVGGGTSL STEDVSSGVG GSKRRTSIFS 60 SSEELIYGDD LYYDEQLLPE KKRRLTPEQV HMLETSFETE IKLEPERKME LSKKLGLQPR 120 QVAVWFQNRR ARWKNKQLET EFCQLKSLYD TLRANHDCLL QNNDSLLADN HRLRSEVISL 180 TGKLQEIKNS SGTSEVLDGV NGAVTLVSPL PESTDVDLDG APLVMESTDL YYTEVVEDGS 240 FSFHGAGCQF TVTCEDYDGS DDGGVYFPGA FSENPGADEL LEKDAESDII DWSVWS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	136	RRARWKNKQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00323	DAP	Transfer from AT3G01470	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NYV1	0.0	A0A0K9NYV1_ZOSMR; Homeobox-leucine zipper protein HAT5

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-48	homeobox 1

Link Out ? help Back to Top
Phytozome	Zosma54g00840.1