PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma54g00590.1

Common Name

ZOSMA_54G00590

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 248aa MW: 28606.7 Da PI: 8.3473

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma54g00590.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39.7	1.6e-12	1	86	10	90
FAR1 10 vGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +GFsvr +++k+ ++ +++++ Csk+g++ ++++rr++ ++r+gC ++k k+ + +++w+ ++++++HnH+++ Zosma54g00590.1 1 MGFSVRLESTKNIldkeYGQKILVMKRLLCSKQGSPCLILPLSDDTRRKNGVSRCGCMTSIKFKRIDrSDNWVTDTVNHDHNHPFT 86 79**9988776664345566789*******998888899*****************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-9	1	86	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MGFSVRLEST KNILDKEYGQ KILVMKRLLC SKQGSPCLIL PLSDDTRRKN GVSRCGCMTS 60 IKFKRIDRSD NWVTDTVNHD HNHPFTNPSK IRYLRINRSI SETSKALFSS LAEVNVPVSQ 120 QAAYFSNQVG GVQNMGCMTL DINNMVRDDR VDLKNYDVDL IVEEFEIKKL ENNDFFYDLV 180 KDDESRLRHL FWADPIMIEN YKLFGDSVTF DTTYKTNVYS MVFGMFCSVN HYRKTTIFGS 240 AFLRYSV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NWW1	0.0	A0A0K9NWW1_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-34	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma54g00590.1