PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma54g00260.1
Common NameZOSMA_54G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 411aa    MW: 45763 Da    PI: 8.9511
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma54g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.2e-17235278548
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
           SRF-TF   5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 
                       +s  qvtfskR++gi+ KA+E+S++C+++ +v+ifs+ g+ y 
  Zosma54g00260.1 235 GESALQVTFSKRKTGIFNKASEISIMCGVDLLVVIFSPGGRPYI 278
                      567779********************************998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.11106.1E-3727206IPR013830SGNH hydrolase-type esterase domain
PROSITE profilePS5006621.067223283IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-22223282IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.2E-20224298IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-14225245IPR002100Transcription factor, MADS-box
PfamPF003191.5E-18233279IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-14245260IPR002100Transcription factor, MADS-box
PRINTSPR004045.4E-14260281IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTFLVVFLSK MFFLLTVDAR MVLGCVNVPA IYMFDDSTAD VGNNNQLLGN EVPRVNYSPY  60
GIDYPGGIAT GRFCNGKIEI DYIAMMMGFK GSPPPYLSTI DNPLKQAQGV NFASGGAGIL  120
DTTSQNTSIS LNAQVKDFKR TKEILMKGKG KLRTKIFLAK SIIFFRIGSN DLYVFSQNFG  180
FENTTKNSIF VSSLASQFKS QIKTLQFSFV RLLFFDEMPR KTYGRKKLEM KKIPGESALQ  240
VTFSKRKTGI FNKASEISIM CGVDLLVVIF SPGGRPYIFG SLEANSIIES FATGNPMESI  300
DPYTCWGLSI RHLASEFRTV SLICEKEKKY LCDLKKTMKE CGVVDDEDLS VDELEVYLNS  360
LKKMKKELLF YSEYLKENRP ATSGLCPFLT SLSSGSFHGN DQVGSNFIFP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYP10.0A0A0K9NYP1_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-21AGAMOUS-like 62