PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma54g00230.1 | ||||||||
Common Name | ZOSMA_54G00230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 18543.5 Da PI: 8.1712 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.7 | 1.3e-17 | 14 | 62 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i +s qvtfskR+ gi+ KA E+Sv+C+++ +++ifs+ gk y + Zosma54g00230.1 14 KKIAKDSSLQVTFSKRKSGIFNKACEISVMCGVDLLIVIFSPGGKPYIF 62 568888999***********************************97766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-24 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.105 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.19E-22 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-19 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.8E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MGRKVFGRKK LELKKIAKDS SLQVTFSKRK SGIFNKACEI SVMCGVDLLI VIFSPGGKPY 60 IFGSPKVDAF LQNFLTGNPI LQPFDPYTNR ENSIDHLAAE YRMISLIFDK EKEYLNELNI 120 SLKDYGVVEY EGLNAHDLEV YLDNLKKLKE NLISYFDFLT TN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NWE6 | 1e-114 | A0A0K9NWE6_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-25 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Zosma54g00230.1 |