PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma52g01380.1

Common Name

ZOSMA_52G01380

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 492aa MW: 53816.6 Da PI: 6.8442

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma52g01380.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	309	357	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +K Ka +L + ++Y++sLq Zosma52g01380.1 309 NSHSLAERVRREKISERMKFLQDLVPGC-----TKvTGKAVMLDEIINYVQSLQ 357 58***********************9.....78899*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.81E-17	304	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.43E-11	304	361	No hit	No description
PROSITE profile	PS50888	15.25	306	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-16	307	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-6	309	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.9E-9	312	362	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MDLSDKGKFG LNKDGDGDVD LKYQHQHQHQ HQHQHQHRRR PYPPPSMSPP PSGISADWQR 60 GLIPVTTTVT TTPWEHHPAS TSENLGFPLN DDGSASSADN NGLIVKPVPG NWNHPPPGIG 120 ILSSGLSQFP ADSAFIERAA RFSYFGNGNF TSMLAPFDSS NPYLNSAGVA LMAGQPPPPQ 180 RSEPPNIARE GGSKDLIASG QGGSNVGSPM NSEKDISAGD NRGDVEVSGS GREDNRSKGT 240 AARKRKWNNN SKKEMEIDKS NEEHQNKEEE NKSNLAINNK NSGKQAKEVL DPPKEDYIHV 300 RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCTKVT GKAVMLDEII NYVQSLQRQV 360 EFLSMKLSAV DPQLDFNLGL LSKDMVQARA SSSSVIGFQP DLVNSFQHPN TQGLMQLGNS 420 GYGPPPDAFR RTINAQLTAI NTFKETKHQM PNSLDEDLHN VLSQMGFGNN APSLNIQESN 480 DNKSCDDSFP M*

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MDLSDKGKFG LNKDGDGDVD LKYQHQHQHQ HQHQHQHRRR PYPPPSMSPP PSGISADWQR  60
GLIPVTTTVT TTPWEHHPAS TSENLGFPLN DDGSASSADN NGLIVKPVPG NWNHPPPGIG  120
ILSSGLSQFP ADSAFIERAA RFSYFGNGNF TSMLAPFDSS NPYLNSAGVA LMAGQPPPPQ  180
RSEPPNIARE GGSKDLIASG QGGSNVGSPM NSEKDISAGD NRGDVEVSGS GREDNRSKGT  240
AARKRKWNNN SKKEMEIDKS NEEHQNKEEE NKSNLAINNK NSGKQAKEVL DPPKEDYIHV  300
RARRGQATNS HSLAERVRRE KISERMKFLQ DLVPGCTKVT GKAVMLDEII NYVQSLQRQV  360
EFLSMKLSAV DPQLDFNLGL LSKDMVQARA SSSSVIGFQP DLVNSFQHPN TQGLMQLGNS  420
GYGPPPDAFR RTINAQLTAI NTFKETKHQM PNSLDEDLHN VLSQMGFGNN APSLNIQESN  480
DNKSCDDSFP M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010943352.1	1e-110	transcription factor bHLH49 isoform X1
Refseq	XP_029116539.1	1e-110	transcription factor bHLH49 isoform X1
TrEMBL	A0A0K9NXS3	0.0	A0A0K9NXS3_ZOSMR; Transcription factor bHLH49

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	2e-78	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma52g01380.1