PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma52g00620.1
Common NameZOSMA_52G00620
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 284aa    MW: 31198.2 Da    PI: 8.5009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma52g00620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-05254275323
                      ETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                      Cp+C+k F ++  L++H  + H
  Zosma52g00620.1 254 CPKCSKGFVDPVALVNHVEReH 275
                      *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183106.15E-13652No hitNo description
Gene3DG3DSA:4.10.1110.106.3E-111052IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.9821059IPR000058Zinc finger, AN1-type
PfamPF014281.5E-131351IPR000058Zinc finger, AN1-type
SMARTSM001541.5E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.8E-1191144IPR000058Zinc finger, AN1-type
SuperFamilySSF1183103.14E-993142No hitNo description
PROSITE profilePS510397.89598149IPR000058Zinc finger, AN1-type
PfamPF014282.2E-8101141IPR000058Zinc finger, AN1-type
SMARTSM001540.14101142IPR000058Zinc finger, AN1-type
SMARTSM003550.075214237IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280216237IPR007087Zinc finger, C2H2
SMARTSM003559.1252275IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974252280IPR007087Zinc finger, C2H2
PROSITE patternPS000280254275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGTPEFPNLG KHCSVDDCKM IDFLPFTCDR CSQVFCLEHR GYSTHSCPKA NQQDVTVVVC  60
PICAKGVRLI PNQDPNITWE SHVNTDCDPA NYQRVNKKKR CPVKGCRETL VFSNTIRCRD  120
CDEEHCLKHR FGLDHNCPGP KKPDTVTSFL GILKGSKKGQ PTSTKNNAGP SWWSNVWNSA  180
ESSMSRLSNS TNQSLQKVIK ESKSSNSSNG PLVEQCTQCS ARFPSVSALI EHAESVHQHG  240
TKGGRNVKVT IDACPKCSKG FVDPVALVNH VEREHGGNSA SKR*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697408.11e-133LOW QUALITY PROTEIN: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16-like
SwissprotQ0D5B91e-122SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A0K9NX870.0A0A0K9NX87_ZOSMR; AN1-type zinc finger protein 2B
STRINGXP_008784866.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-115C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]