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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Zosma52g00380.1 |
| Common Name | ZOSMA_52G00380 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family |
C2H2 |
| Protein Properties |
Length: 303aa MW: 32707.3 Da PI: 7.4733 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma52g00380.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.7 | 0.00037 | 9 | 29 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ C+++F++ +L H+r+H
Zosma52g00380.1 9 CKLCDRRFPSGKSLGGHMRSH 29
********************9 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50157 | 9.162 | 7 | 29 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.072 | 7 | 29 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 1.0E-9 | 7 | 29 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.95E-6 | 7 | 29 | No hit | No description |
| PROSITE pattern | PS00028 | 0 | 9 | 29 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 3.95E-6 | 128 | 152 | No hit | No description |
| Pfam | PF13912 | 5.7E-9 | 132 | 153 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 110 | 133 | 153 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 2.8E-10 | 209 | 233 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 9.743 | 210 | 232 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 1.7 | 210 | 232 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 212 | 232 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MDGGVEHGCK LCDRRFPSGK SLGGHMRSHV MSYGLRKNPK KTTKIAEEED GEIEMELKEV 60
ALCLMMMSAD STASATAEFS DKNSAVAEDD GVDDDDEDEK EREDQYLRKR KSRKRSDYSS 120
GLEELGKIKK SRFQCSGCKK SFGSYQALGG HRAANKRTKG GCSSSIKKET ETETESDPTP 180
FVSVLESDGV QQPPPSVGSN KYKNKKASHF ECSLCFKVFG SGQALGGHKR AHLTVNSGNG 240
YVDAPEQRAS TISPDGLLFD LNVPAGFTDG NSGVSNEERV GSSLVSWSTG RKRGHSLIVS 300
GL*
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