PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma52g00180.1

Common Name

ZOSMA_52G00180

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

WOX

Protein Properties

Length: 383aa MW: 43039.4 Da PI: 10.0878

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma52g00180.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51	2.4e-16	43	103	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le F++ +p ++e++++ +l ++ +++V++WFqNr+ + k+ Zosma52g00180.1 43 KPRWNPKAEQIRILEGIFNSgIVNPPRDEIKRIRVQLqeygQVGDANVFYWFQNRKSRNKH 103 89***************99***********************************995 PP
2	Wus_type_Homeobox	107.5	7.9e-35	42	104	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P++eQi+iLe +++sG+++P+++ei+ri+ +L+eyG+++d+NVfyWFQNrk+R+++k Zosma52g00180.1 42 PKPRWNPKAEQIRILEGIFNSGIVNPPRDEIKRIRVQLQEYGQVGDANVFYWFQNRKSRNKHK 104 579**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.6E-6	32	102	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.75	39	104	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-11	39	107	IPR009057	Homeodomain-like
SMART	SM00389	4.2E-5	41	108	IPR001356	Homeobox domain
CDD	cd00086	1.51E-4	42	104	No hit	No description
Pfam	PF00046	5.6E-14	43	103	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MASKNGRWTS MFKSKPCSTH HQWQLDRNTL SGVDAEEKTP DPKPRWNPKA EQIRILEGIF 60 NSGIVNPPRD EIKRIRVQLQ EYGQVGDANV FYWFQNRKSR NKHKIKQLRS RQSINCPTKI 120 NHTTTTTASA SVPAGVSNSP SKSVNNKTPH TDLPDLPTDL LFQSKSPFEF KSSNVKHSRP 180 WNQQTVVSRQ QNQQEDFMLT GIYEHDNNIQ NAAVASKEKN HSYQTTPVNT IVAPSITATT 240 TTTSATTQDP FNGLLQGMPE ETSTYVDVAE DNLTQTKRVH GIRGSLITGT RKVYTRKGMS 300 SELIFFFFLC WFRVAGISRN RDSRVIVLIN EVEFEVGAGH FNVREAFGTG AVLFHSSGLP 360 VLLNDWGFTL HPLQQGASYF LV*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MASKNGRWTS MFKSKPCSTH HQWQLDRNTL SGVDAEEKTP DPKPRWNPKA EQIRILEGIF  60
NSGIVNPPRD EIKRIRVQLQ EYGQVGDANV FYWFQNRKSR NKHKIKQLRS RQSINCPTKI  120
NHTTTTTASA SVPAGVSNSP SKSVNNKTPH TDLPDLPTDL LFQSKSPFEF KSSNVKHSRP  180
WNQQTVVSRQ QNQQEDFMLT GIYEHDNNIQ NAAVASKEKN HSYQTTPVNT IVAPSITATT  240
TTTSATTQDP FNGLLQGMPE ETSTYVDVAE DNLTQTKRVH GIRGSLITGT RKVYTRKGMS  300
SELIFFFFLC WFRVAGISRN RDSRVIVLIN EVEFEVGAGH FNVREAFGTG AVLFHSSGLP  360
VLLNDWGFTL HPLQQGASYF LV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NZE5	0.0	A0A0K9NZE5_ZOSMR; WUSCHEL-related homeobox

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2666	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-46	homeobox-3

Link Out ? help Back to Top
Phytozome	Zosma52g00180.1