![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma51g00160.1 | ||||||||
Common Name | ZOSMA_51G00160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 210aa MW: 23725.7 Da PI: 6.6688 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 90.8 | 1.1e-28 | 133 | 192 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +dDg +WrKYGqK kg+++pr+YYrCt + Cpv+k+v+++ +d +++++tYeg+Hnh+ Zosma51g00160.1 133 MDDGGQWRKYGQKISKGNPCPRAYYRCTITsACPVRKHVQKCVDDLSILITTYEGTHNHP 192 58**************************9999***************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-31 | 118 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-26 | 126 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.954 | 128 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-31 | 133 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-24 | 134 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MNKALDVQFR DEEILLSDYN GDGDDEFAKY SSRKQQEELE SKRAEMGEMR EENKRLIPTN 60 TSTVLSSMEE DVDDLVSLRL GMRSPPPSLP IENNKRSGDD NIHQNIPISQ DSQQIQVKKA 120 RVTVRARCDA PMMDDGGQWR KYGQKISKGN PCPRAYYRCT ITSACPVRKH VQKCVDDLSI 180 LITTYEGTHN HPLPMLAATT TRHTTTNIL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-22 | 124 | 195 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-22 | 124 | 195 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006645581.1 | 2e-52 | PREDICTED: probable WRKY transcription factor 72 | ||||
TrEMBL | A0A0K9NXL5 | 1e-156 | A0A0K9NXL5_ZOSMR; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P28190_001 | 2e-50 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14319 | 22 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15130.1 | 3e-45 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma51g00160.1 |