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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma51g00060.1 | ||||||||
Common Name | ZOSMA_51G00060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 18028.5 Da PI: 8.9371 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.8e-18 | 39 | 88 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p +kr r++lg++ ta Aaka++ a +l+g Zosma51g00060.1 39 RYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAIAAAKAYDTAVFCLRG 88 8******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.10E-28 | 38 | 97 | No hit | No description |
Pfam | PF00847 | 2.5E-11 | 39 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-21 | 39 | 97 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.064 | 39 | 96 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-31 | 39 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-38 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-12 | 40 | 51 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-12 | 78 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MGEDCPTVAS LPLSSPAAEA AAASTSLYVH RQREKPQKRY RGVRMRKWGK WVAEIREPNK 60 RSRIWLGSYS TAIAAAKAYD TAVFCLRGRS ARLNFPEELA EDGRDCRDDQ HLSAALIRMK 120 ATEVGARVDA VQKVWKNPDL NQKPIPECSS DVEEEWVMHS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 39 | 99 | 14 | 75 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00430 | DAP | Transfer from AT4G06746 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019082291.1 | 7e-50 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q8W3M3 | 1e-42 | RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9 | ||||
TrEMBL | A0A0K9NXK4 | 1e-115 | A0A0K9NXK4_ZOSMR; Ethylene-responsive transcription factor | ||||
STRING | VIT_18s0001g10150.t01 | 2e-50 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 4e-36 | related to AP2 9 |
Link Out ? help Back to Top | |
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Phytozome | Zosma51g00060.1 |
Publications ? help Back to Top | |||
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