PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g00580.1
Common NameZOSMA_4G00580
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 513aa    MW: 55850.5 Da    PI: 6.6168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g00580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16319365455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  ErrRRdriN+++  L++l+P++      K++Ka++L +A+eY+k Lq
  Zosma4g00580.1 319 VHNLSERRRRDRINEKMRALQDLIPNC-----NKVDKASMLDEAIEYLKTLQ 365
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20312373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-20312373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.374315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.75E-18318369No hitNo description
PfamPF000106.0E-14319365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-18321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSDLPTAFPN ADLVDFQWDG GEIFMQDQQS KHRKTDSSFD VAVHSPVRGI TIQQEPEDDL  60
ANWLNHTTED YGFEFISEST NQTGGDNTVF PKIFAAGSGT AADCDLGRRT QMGLQWNGLV  120
SDSKSTNPTW EFPDSKVQME VQISPASTRT GSGLVNFSHF ARPVSHPKHN LQNVDRMKSN  180
EKASTTAPST RSVESTPSGD PKSILLQEQL LPAKPKKNQG SDGLNKNKIP PTINLPISPS  240
ASSKQEDLGK CSDPIPTMLV SSSSSDQRHR FKRKTHEEAS AVESGYQSHD VDDDDPTVTK  300
KTAIGRGGSN PKRSRAAEVH NLSERRRRDR INEKMRALQD LIPNCNKVDK ASMLDEAIEY  360
LKTLQFQVQI MSMSGGVGLY MQPAMMLPQT MQHPQMAHFS HMGYGMGMGM FDMNSPPMFQ  420
MPPAIPGASK FHCLNPGVST TANSVGFPIY GHPSVSMNHL PSFTPLPTPM AGLNSGPVNR  480
NSEIGGSKLL ETENPTAVAA VDGNREPGGT QI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271275KRKTH
2323328ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NY980.0A0A0K9NY98_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.28e-44phytochrome interacting factor 3