PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma4g00580.1 | ||||||||
Common Name | ZOSMA_4G00580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 513aa MW: 55850.5 Da PI: 6.6168 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.5 | 1.8e-16 | 319 | 365 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L++l+P++ K++Ka++L +A+eY+k Lq Zosma4g00580.1 319 VHNLSERRRRDRINEKMRALQDLIPNC-----NKVDKASMLDEAIEYLKTLQ 365 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-20 | 312 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-20 | 312 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.374 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.75E-18 | 318 | 369 | No hit | No description |
Pfam | PF00010 | 6.0E-14 | 319 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.1E-18 | 321 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MSDLPTAFPN ADLVDFQWDG GEIFMQDQQS KHRKTDSSFD VAVHSPVRGI TIQQEPEDDL 60 ANWLNHTTED YGFEFISEST NQTGGDNTVF PKIFAAGSGT AADCDLGRRT QMGLQWNGLV 120 SDSKSTNPTW EFPDSKVQME VQISPASTRT GSGLVNFSHF ARPVSHPKHN LQNVDRMKSN 180 EKASTTAPST RSVESTPSGD PKSILLQEQL LPAKPKKNQG SDGLNKNKIP PTINLPISPS 240 ASSKQEDLGK CSDPIPTMLV SSSSSDQRHR FKRKTHEEAS AVESGYQSHD VDDDDPTVTK 300 KTAIGRGGSN PKRSRAAEVH NLSERRRRDR INEKMRALQD LIPNCNKVDK ASMLDEAIEY 360 LKTLQFQVQI MSMSGGVGLY MQPAMMLPQT MQHPQMAHFS HMGYGMGMGM FDMNSPPMFQ 420 MPPAIPGASK FHCLNPGVST TANSVGFPIY GHPSVSMNHL PSFTPLPTPM AGLNSGPVNR 480 NSEIGGSKLL ETENPTAVAA VDGNREPGGT QI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 271 | 275 | KRKTH |
2 | 323 | 328 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NY98 | 0.0 | A0A0K9NY98_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 8e-44 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Zosma4g00580.1 |