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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma4g00210.1 | ||||||||
Common Name | ZOSMA_4G00210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | Trihelix | ||||||||
Protein Properties | Length: 248aa MW: 28792.3 Da PI: 9.7037 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.3 | 4.5e-09 | 13 | 87 | 2 | 75 |
trihelix 2 WtkqevlaL.iearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+ +e l+L +e+ er +++ + ++W +++++ + + r++ qC+ kw+++ +y +ik++e++ + ++ Zosma4g00210.1 13 WSLHEMLTLvLEINAIYAERGSSTIPAHQKWNLIADNLIALNICRNSFQCRRKWDSMLSEYYAIKDWESRLRYQT 87 888888777468888888888899999*****************************************9975444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.6E-7 | 12 | 81 | No hit | No description |
PROSITE profile | PS50090 | 6.644 | 13 | 70 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSSFTRSQII PDWSLHEMLT LVLEINAIYA ERGSSTIPAH QKWNLIADNL IALNICRNSF 60 QCRRKWDSML SEYYAIKDWE SRLRYQTAST SKSNGGDSYW CLESDKRKDL KLPIEFDREL 120 FWLIEGFINK KVVNKKVIKG KDHMKVMPEI ETPSSPQSSS ASSLSLSGGQ REKKRKMSRK 180 MKMKDKIMEI FRESCDQLLL DVKHIETIFN KKPNAANIEE FIRQMQQMDK LVTLFGEVIS 240 TLDRLNV* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P0I4 | 0.0 | A0A0K9P0I4_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6353 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 1e-29 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | Zosma4g00210.1 |