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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zosma4g00190.1 |
Common Name | ZOSMA_4G00190 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family |
Trihelix |
Protein Properties |
Length: 139aa MW: 16298.6 Da PI: 9.2034 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zosma4g00190.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 33.8 | 8.8e-11 | 13 | 87 | 2 | 75 |
trihelix 2 WtkqevlaLi.earremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75
W+ +e l+Li e+ +e+ +++ + ++W +++++ + + r++ qC+ kw++l +y+ ik++e++ + ++
Zosma4g00190.1 13 WSLHEMLTLIlEIDAVYDEHGSNTISSHQKWNIIADHLIALNICRNSFQCRGKWDSLLFEYRVIKDWESRSRYQT 87
9989988886499999999999999*******************************************9975444 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 139 aa
Download sequence Send
to blast |
MSRFTRSRII PDWSLHEMLT LILEIDAVYD EHGSNTISSH QKWNIIADHL IALNICRNSF 60 QCRGKWDSLL FEYRVIKDWE SRSRYQTAST SRSNGDDSYW CLKADKRKDL KLPIEFNREL 120 FGLIEGFVIK RSSKPKIT*
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Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G31270.1 | 1e-28 | sequence-specific DNA binding transcription factors |