PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma4g00190.1 | ||||||||
Common Name | ZOSMA_4G00190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 139aa MW: 16298.6 Da PI: 9.2034 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 33.8 | 8.8e-11 | 13 | 87 | 2 | 75 |
trihelix 2 WtkqevlaLi.earremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+ +e l+Li e+ +e+ +++ + ++W +++++ + + r++ qC+ kw++l +y+ ik++e++ + ++ Zosma4g00190.1 13 WSLHEMLTLIlEIDAVYDEHGSNTISSHQKWNIIADHLIALNICRNSFQCRGKWDSLLFEYRVIKDWESRSRYQT 87 9989988886499999999999999*******************************************9975444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.7E-8 | 12 | 84 | No hit | No description |
PROSITE profile | PS50090 | 6.62 | 13 | 70 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence Send to blast |
MSRFTRSRII PDWSLHEMLT LILEIDAVYD EHGSNTISSH QKWNIIADHL IALNICRNSF 60 QCRGKWDSLL FEYRVIKDWE SRSRYQTAST SRSNGDDSYW CLKADKRKDL KLPIEFNREL 120 FGLIEGFVIK RSSKPKIT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P0K7 | 2e-97 | A0A0K9P0K7_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6353 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31270.1 | 1e-28 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma4g00190.1 |