PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma49g01130.1

Common Name

ZOSMA_49G01130

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 857aa MW: 98274.8 Da PI: 7.54

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma49g01130.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.8	2e-24	95	183	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA +vGF vr+++s++sk n+ +++ +fvCs+eg ++e++ +k+r++ a+ r gCka+l+v ++ dg+w+vtkl +eHnHe+ Zosma49g01130.1 95 FYIAYAGHVGFCVRIARSRRSKCNEDVIMLRFVCSREGWSREKRIIeGKKTRKRAASIREGCKAMLEVIRKGDGRWVVTKLLKEHNHEV 183 9***********************************8877765436788889999****************************96 PP
2	FAR1	58.6	2.1e-18	217	308	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+++GF+ r+++s++s ++++ ++ ++vCsk+ +++ ++++ ++ + +++ +++ gC+a +++ +++ ++w+v+kl leH+H+l Zosma49g01130.1 217 FYYAYASRLGFEARVRQSRRSLHDETLKMLKLVCSKHRYHSGRDNHedgRSAQCNETIKEKDGCEALFEIIRKDGDRWVVSKLMLEHSHPLI 308 9***********************************9999998865556666789999****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-22	95	183	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	6.0E-16	217	308	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-20	409	497	IPR018289	MULE transposase domain
Pfam	PF04434	2.4E-9	689	722	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.509	689	725	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.3E-7	700	727	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence Send to blast
MDCNSSGEDG LIEDNVNLED DSINFWATID VSPHVAEPDQ HPPLHHQHLE HQSAPPPHME 60 MVESSIRRDL FETEETQLEP FVGMEFESGE AAKTFYIAYA GHVGFCVRIA RSRRSKCNED 120 VIMLRFVCSR EGWSREKRII EGKKTRKRAA SIREGCKAML EVIRKGDGRW VVTKLLKEHN 180 HEVGMPSRVH YIATEGDAEL EPFLGMEFES LEIARTFYYA YASRLGFEAR VRQSRRSLHD 240 ETLKMLKLVC SKHRYHSGRD NHEDGRSAQC NETIKEKDGC EALFEIIRKD GDRWVVSKLM 300 LEHSHPLISA PLSKVRCVRS QGEILVIAKN FADTRNLLLN GQESQYPRDV RYNDLGPEDA 360 QNLFEYFRKI QSENLAFYYL VQVEHNNFTT NILWADAKAR MAYNYFGDVV TFDTSYLHDK 420 DMMPIVTFSG VNHHMQPVVF GCALIVDQTE TSFAWLFENW LVAMGGNPPV SLITNLDVAI 480 AAAAAKVFPN TRHRFCKKCI LNRFQVEFTD VYLSNTTFDG ELRSCIDGSE TSEAFESCWE 540 LIIDKYNLRD NEYLQSLYSI RQHWVPLYFK DSFFAEISIS PPPEGIDKIV EKHFTAKTSL 600 RVAVRQFGMA IANRFEKEAL ADFNTIHNKP FLRTAGPMEK QAASIYTRTV FEKFQEEFIQ 660 SLGYHVNKME DGAISRYCVA RNEDAHETYI VTFKASENKA KCSCCMFEFT GILCRHAIRV 720 FIISGIRVLP KNYILKRWTK NAKSNVVSDE CGVELRGNNE EPSDVRYNDL CRDAMKCARE 780 GSASAEFYRI AKDALQKAVH EVVSAKQKKG QLTLQNFIKS QKTKKFTRSS KKKDDVKKCE 840 RKKSSRVIPS SVKDSI*

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence Send to blast

MDCNSSGEDG LIEDNVNLED DSINFWATID VSPHVAEPDQ HPPLHHQHLE HQSAPPPHME  60
MVESSIRRDL FETEETQLEP FVGMEFESGE AAKTFYIAYA GHVGFCVRIA RSRRSKCNED  120
VIMLRFVCSR EGWSREKRII EGKKTRKRAA SIREGCKAML EVIRKGDGRW VVTKLLKEHN  180
HEVGMPSRVH YIATEGDAEL EPFLGMEFES LEIARTFYYA YASRLGFEAR VRQSRRSLHD  240
ETLKMLKLVC SKHRYHSGRD NHEDGRSAQC NETIKEKDGC EALFEIIRKD GDRWVVSKLM  300
LEHSHPLISA PLSKVRCVRS QGEILVIAKN FADTRNLLLN GQESQYPRDV RYNDLGPEDA  360
QNLFEYFRKI QSENLAFYYL VQVEHNNFTT NILWADAKAR MAYNYFGDVV TFDTSYLHDK  420
DMMPIVTFSG VNHHMQPVVF GCALIVDQTE TSFAWLFENW LVAMGGNPPV SLITNLDVAI  480
AAAAAKVFPN TRHRFCKKCI LNRFQVEFTD VYLSNTTFDG ELRSCIDGSE TSEAFESCWE  540
LIIDKYNLRD NEYLQSLYSI RQHWVPLYFK DSFFAEISIS PPPEGIDKIV EKHFTAKTSL  600
RVAVRQFGMA IANRFEKEAL ADFNTIHNKP FLRTAGPMEK QAASIYTRTV FEKFQEEFIQ  660
SLGYHVNKME DGAISRYCVA RNEDAHETYI VTFKASENKA KCSCCMFEFT GILCRHAIRV  720
FIISGIRVLP KNYILKRWTK NAKSNVVSDE CGVELRGNNE EPSDVRYNDL CRDAMKCARE  780
GSASAEFYRI AKDALQKAVH EVVSAKQKKG QLTLQNFIKS QKTKKFTRSS KKKDDVKKCE  840
RKKSSRVIPS SVKDSI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784021.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026658787.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026658788.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0K9NZ90	0.0	A0A0K9NZ90_ZOSMR; FAR1-related sequence 5
STRING	XP_008784021.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-151	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma49g01130.1