PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma49g00850.1
Common NameZOSMA_49G00850
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 672aa    MW: 73263.7 Da    PI: 5.4191
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma49g00850.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12474519454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N +f  Lr ++P+       K++Ka+ L  A+ YI++L
  Zosma49g00850.1 474 NHVEAERQRREKLNLKFYALRAVVPNV-----SKMDKASLLNDAISYINDL 519
                      799***********************6.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-5245228IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85470519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17473538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.91E-14473520No hitNo description
Gene3DG3DSA:4.10.280.103.7E-17474541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-10474519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-14476525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MNDFQSQHGY ISIPQSSHSS ITTTNDLLSL SPKSVHPSSF NQDNLQQRLQ SLVDSASGNW  60
TFAIFWQLSL DQFSGNSFFS WGDGYYRGCD EEKKTKVVSN SDEYLGVQEH RKNVLRELNA  120
LIAGPSPSGE DSVSDEVTDI EWFFLVSMTQ SFVNGSDLPG QTFFSGTPSW VAGAERLSAV  180
PCERARQASV LGTQTLVCVP VSNGVVELGS TEVIFQNATI LNKIKFLFNS DKRDEGLESS  240
MPPATLAVAD FLDSDPDINW ISDLSQPVDD NTATTVITDG SNSNNNATEG SVPGILFPPV  300
SNSKELSSEN TLSTSKKEGD GASAQISQKL HQPNNQNELS RDIIFSEFGL NSCNQARISK  360
PESGEILNFE NVARGVSSSA TPTTTVHFSA KKKTNVVTSR GCNDSIEGGM LSFSSSAVAR  420
SLSLVDPLKA AGVVGESEHS DVEVLTGNEV DSCPSKHPKK RGRKPANGRI EPLNHVEAER  480
QRREKLNLKF YALRAVVPNV SKMDKASLLN DAISYINDLR SKMKALELDN VDLRSKIESL  540
KKENKDSATS GCSTIRSLSS SSPSVYHNTD DIPKNANGSV VRFQSLDIDV KIVDRNAIIH  600
MESSRKNHPA ALLMLALKDL DLEISYSTLS IVNEIAIQHV TLQMTNRLFT KEQLTSSLYT  660
KLSACRFPQL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-56402294193Transcription factor MYC3
4rqw_B1e-56402294193Transcription factor MYC3
4rs9_A1e-56402294193Transcription factor MYC3
4yz6_A1e-56402294193Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYW10.0A0A0K9NYW1_ZOSMR; Transcription factor MYC2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-132bHLH family protein