PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma48g00640.1
Common NameZOSMA_48G00640
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Dof
Protein Properties Length: 194aa    MW: 21367.6 Da    PI: 9.3711
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma48g00640.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.8e-383394263
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                     +++  +cprC+s+ntkfCyynnyslsqPry+Ck+CrryWt+GG+lrnvPvGgg+rknk+sss
  Zosma48g00640.1 33 EQHPFNCPRCNSSNTKFCYYNNYSLSQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKRSSS 94
                     567889****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-223282IPR003851Zinc finger, Dof-type
PfamPF027014.7E-333691IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.643791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MLASQLQYWS QEMMPPPPSP PPPSRPHRDP NKEQHPFNCP RCNSSNTKFC YYNNYSLSQP  60
RYLCKSCRRY WTEGGSLRNV PVGGGSRKNK RSSSSPDIPK KPKFNQGDYH HQPQHGEDLS  120
LFFTTPQHPE LIAASPSSMD VLNTSTTAVY SSGGRFGLQD LRSSNSTANN SLNFPSNGDM  180
VVGKAGSYGH GGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021638405.17e-38dof zinc finger protein DOF4.6-like isoform X2
TrEMBLA0A0K9NZL01e-140A0A0K9NZL0_ZOSMR; Dof zinc finger protein
STRINGXP_002515648.12e-35(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.13e-29Dof family protein