![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma47g00590.1 | ||||||||
Common Name | ZOSMA_47G00590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 118aa MW: 13804.6 Da PI: 8.4993 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 26.5 | 1.7e-08 | 13 | 87 | 2 | 75 |
trihelix 2 WtkqevlaL.iearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 W+ +e l+L +e++ ++r +++ + ++W +++++ + + r++ C kw++l ++ ik++e++ + ++ Zosma47g00590.1 13 WSLHEMLTLvLEIKVVYDKRGSSTISGHQKWNIIGDHLIALNICRNSSHCHRKWDSLISEHYTIKDWESRSRYQT 87 88888887747999999***************************************************9975444 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 118 aa Download sequence Send to blast |
MSRFTHSHII PDWSLHEMLT LVLEIKVVYD KRGSSTISGH QKWNIIGDHL IALNICRNSS 60 HCHRKWDSLI SEHYTIKDWE SRSRYQTAST SRSNGGDSYW CLESDKRKDL KLRIEFD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NZM7 | 5e-80 | A0A0K9NZM7_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6353 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G31270.1 | 5e-23 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma47g00590.1 |