PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma46g00080.1
Common NameZOSMA_46G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 273aa    MW: 29247.1 Da    PI: 10.2156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma46g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.91.9e-06141162223
                      EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      +C+ Cgk F++  +L  H+r+H
  Zosma46g00080.1 141 PCTECGKIFRTMKSLFGHMRSH 162
                      5********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-5131163No hitNo description
PROSITE profilePS5015710.221140162IPR007087Zinc finger, C2H2
PfamPF139125.1E-7142164IPR007087Zinc finger, C2H2
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-5142162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDTPPAPPSV PPPIPLPLPP PPTTTTTTTI ATDTTTASAH PIGVVPMDEA TALPQNIVSS  60
YCTSGVAANL DIQTTKYFDR SPFSSSSSSV QYLHTGSSSK KKSFQRPIPT TVAKTKMKKN  120
DITPVPAGNE MVLTSSPPPP PCTECGKIFR TMKSLFGHMR SHPERSWRGI KPPANRQRPL  180
APTPVLHFTE TEHEVASALI LLRKASPRFG AQGRRTRTSR KKENNRKTST STGIQVPALA  240
IDLNQPAGNS NDGNNPDDPD DPDTSLDLKL SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NZV10.0A0A0K9NZV1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116122130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-18C2H2-like zinc finger protein