PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma467g00090.1
Common NameZOSMA_467G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 394aa    MW: 43382.2 Da    PI: 7.3564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma467g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10200243654
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       n  Er RR ++ ++f+ L+ l+P++     +K +Ka+i   A  YIk+L
  Zosma467g00090.1 200 NNTERHRRGQMSDKFNALKALIPNP-----TKSDKASIISDAAVYIKEL 243
                       778**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-13193257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.049194243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-9200248No hitNo description
Gene3DG3DSA:4.10.280.102.3E-12200253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-8200243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MYDEIGFLGS NVDPQQCSIP SFSTMGSFSR EVDTAISGLS LNGQLGFDSK FAAHDDVDGD  60
DHQLDNFQHY STFNPSLSHP PPPSISLNYP TTHKRPLLPS HTPSAVYNLQ IQPDGVVYDD  120
YCMVRPPNLY VDVPPLINVD HGSNMMMGGS EPFSGIVNNA DINLWPCGEM VEECGNMNPV  180
FGLWKEIGGS GGRGKAKVGN NTERHRRGQM SDKFNALKAL IPNPTKSDKA SIISDAAVYI  240
KELLRTVEEL KTLVLRKRLR GTRGGGGVRK KQRRNAVCKS VDDVVEMDNN VGLLRSSWLQ  300
RKSKDTTVDI RIVEDEVNIK VTTRKKPGCL LVISNVIHKL QLQLVHLTSG NIGDYLVFMI  360
NTKIQEGSIV YASGIANELT HALNSHYSLQ FQS*
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278769.13e-58PREDICTED: transcription factor EAT1-like
SwissprotQ84TK13e-46BH010_ARATH; Transcription factor bHLH10
TrEMBLA0A0K9P0290.0A0A0K9P029_ZOSMR; Uncharacterized protein
STRINGXP_010278769.11e-57(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.22e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]