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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Zosma45g00510.1 |
| Common Name | ZOSMA_45G00510 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family |
C3H |
| Protein Properties |
Length: 313aa MW: 32766 Da PI: 9.4792 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma45g00510.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 19.7 | 1.5e-06 | 42 | 65 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25
k ++C f+ t C++G++C+F H
Zosma45g00510.1 42 KSKPCTKFFSTSGCPFGETCHFLH 65
7789******************** PP
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| 2 | zf-CCCH | 25 | 3.3e-08 | 106 | 130 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
kt+ C++f Ck+G++C+FaHg
Zosma45g00510.1 106 KTRMCKRFNTPEGCKFGEKCHFAHG 130
89**********************9 PP
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| 3 | zf-CCCH | 35.1 | 2.3e-11 | 279 | 303 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC++f + G C +G+rC+FaHg
Zosma45g00510.1 279 YKTKLCDNFTK-GSCTFGERCHFAHG 303
9**********.*************8 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.51 | 40 | 67 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.399 | 40 | 68 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.42E-6 | 41 | 65 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.2E-7 | 42 | 65 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 8.8E-5 | 42 | 65 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.117 | 104 | 132 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.41 | 104 | 131 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.9E-13 | 105 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 9.42E-8 | 105 | 134 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.2E-4 | 106 | 130 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF54791 | 2.92E-15 | 174 | 255 | IPR004088 | K Homology domain, type 1 |
| SMART | SM00322 | 3.1E-12 | 183 | 253 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 1.1E-15 | 183 | 252 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.403 | 184 | 248 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 2.8E-11 | 186 | 250 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 9.81E-15 | 186 | 248 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 4.9E-16 | 274 | 307 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.18E-8 | 278 | 307 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 16.671 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.1E-7 | 278 | 304 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.9E-9 | 279 | 303 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MESFAAERKR ARPDLVAASN GGVPTLKRFK ESESFQSGIG SKSKPCTKFF STSGCPFGET 60
CHFLHFVPGG INVVAQLNNM SSALPPSSRT NIQNPHGADG PVPGVKTRMC KRFNTPEGCK 120
FGEKCHFAHG DRELVRPFLP PHEDPRSFGG PMGGGGGRFA GRQQPFDPLS PTGGHPAAAS 180
FGASATAKIS VDASLAGGII GKGGVNSKQI CRATGAKLSI RDHESDPNLR NIELEGSFDQ 240
IKQASAMVRE LIVNISSSAP PAPTGMPGSG GPRVPGNNYK TKLCDNFTKG SCTFGERCHF 300
AHGADELVKS GV*
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