PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma45g00450.1

Common Name

ZOSMA_45G00450

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 280aa MW: 32123.9 Da PI: 9.3549

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma45g00450.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.4	1.3e-14	6	98	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+ GF vr ++k+ + ++ +++++ Csk+ +++ ++ +rr++ ++r+gC a++k k+ + ++kw+ ++++++HnH+++ Zosma45g00450.1 6 YYDFASGKGFFVRLGSTKNVldkqSGQKILVMKRLLCSKQSSPSLILPPSDGTRRKNGVSRCGCMANIKFKRIDrSDKWVTDTVNHDHNHPFT 98 999********9998877764345556789********99988999*****************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-11	6	98	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-6	220	256	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MAFQSYYDFA SGKGFFVRLG STKNVLDKQS GQKILVMKRL LCSKQSSPSL ILPPSDGTRR 60 KNGVSRCGCM ANIKFKRIDR SDKWVTDTVN HDHNHPFTTP SKIRYLPINR SISETSKVLF 120 SSLAEVNVPI SQQAAYFSNQ VGGLQNMGYM TLGINNMVRD DHVDLKNYDV DLIVEEFEIR 180 KLENNDFFYD LVKDDEGRLR HLFWADLIMI ENYKLFGDSV TFDTTYKTNV YSMVFGMFCG 240 VNHHRKTTIF GSAFLRYSVS IFYLHSYILS PLNLFIPMK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P0J6	0.0	A0A0K9P0J6_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-31	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma45g00450.1