PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma45g00280.1
Common NameZOSMA_45G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 450aa    MW: 49983.9 Da    PI: 8.5179
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma45g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.7e-29128184259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se++rsY+rCt+a+C++kkkve+ + d++v+ei+Y+g+Hnhe
  Zosma45g00280.1 128 SDGYNWRKYGQKQVKSSEHSRSYFRCTQANCCAKKKVEHYR-DGHVIEIIYRGQHNHE 184
                      7***************************************9.***************7 PP
2WRKY102.42.6e-32298356159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK vkg+++prsYY+Ct +gCpv+k+ve++ ed k v+itYeg+Hnh+
  Zosma45g00280.1 298 VNDGYRWRKYGQKIVKGNPNPRSYYKCTNTGCPVRKHVEKALEDVKSVIITYEGKHNHD 356
                      58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-24122186IPR003657WRKY domain
SuperFamilySSF1182903.4E-23125186IPR003657WRKY domain
SMARTSM007741.0E-29127185IPR003657WRKY domain
PROSITE profilePS5081120.484128186IPR003657WRKY domain
PfamPF031061.3E-21129184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-34283358IPR003657WRKY domain
PROSITE profilePS5081135.003293358IPR003657WRKY domain
SuperFamilySSF1182909.94E-28293358IPR003657WRKY domain
SMARTSM007741.8E-36298357IPR003657WRKY domain
PfamPF031062.4E-25299356IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MTESSEASSE SRGGGSGDLE EVSLIMNSSI VAVPVIEVPF FVVTPGTMET TSQSDVGFKE  60
QIDMKHQSQV EMKAENTHSL SDPITQKASS LFQYLNSNED IISPKALQLS TSNKKPQSTH  120
LIVKTTSSDG YNWRKYGQKQ VKSSEHSRSY FRCTQANCCA KKKVEHYRDG HVIEIIYRGQ  180
HNHELPQKTN FLKEQVSHCS MPESGKKNSL ISRLEYNGLN ICTTKAENES CNKASEQMHR  240
SNVCERDHHG IKTEGDFTNE PEPKRRFCEN SANYSAPLMK TVKEPKVVIQ ASFDSGIVND  300
GYRWRKYGQK IVKGNPNPRS YYKCTNTGCP VRKHVEKALE DVKSVIITYE GKHNHDVPPC  360
KNGNETSTPK LLVPPYEKSL LEASRHETQS KNPQDQGGGK MVLESAKTLL SIGSKSSSGD  420
NGKNKTSNSD VIQSPLLDRS CLTVSVQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-29123358877Probable WRKY transcription factor 4
2lex_A1e-29123358877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P0I10.0A0A0K9P0I1_ZOSMR; Putative WRKY transcription factor 4
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-69WRKY DNA-binding protein 4