PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma44g01640.1

Common Name

ZOSMA_44G01640

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 336aa MW: 37909.6 Da PI: 9.3851

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma44g01640.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.2	4.8e-17	182	274	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA++ GFsvr +++++ + ++ ++r++ Cske k + + + ++rr++a++r gC a++k+k+e +++w v+++ leHnH+l+ Zosma44g01640.1 182 YYGYASKDGFSVRLGSTNYNtskiDGKKLLVMRRLLCSKEEKVNLLHPVKLDKRRRNAVSRRGCCASVKIKREAmSEEWIVKNIILEHNHPLT 274 899********9988777665445566899******9998888899******************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-14	182	274	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSQNLLNVID QSSPLPQPNI ESQNTIYFSP NSSSIYITSP SYRPFHAQPL NTSTERPRPQ 60 CNVSLDFYSI QSKKSSCCNP NDTYGNAEYS RNNDFPLIPN ATYGPHECND IPLDNVQTPI 120 SSWTNNVTRL RNANNFSDNA SPSFFIFKQP TDTNASSDSV KVNSPPFVGQ IFSSYSDALD 180 QYYGYASKDG FSVRLGSTNY NTSKIDGKKL LVMRRLLCSK EEKVNLLHPV KLDKRRRNAV 240 SRRGCCASVK IKREAMSEEW IVKNIILEHN HPLTTSSKVR FLPINRSISS TSRLLFNSLS 300 KVNIPVFSAD CLFFFSSWRN RAYVMYSIGY IEFGS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P130	0.0	A0A0K9P130_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	7e-16	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Zosma44g01640.1