PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma44g01450.1
Common NameZOSMA_44G01450
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 113aa    MW: 12500.5 Da    PI: 8.7284
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma44g01450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-051738122
                     EEETTTTEEESSHHHHHHHHHH CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt 22
                     +kCp C k ++rk++L+ H + 
  Zosma44g01450.1 17 HKCPACFKQYKRKEHLVEHVKH 38
                     79*****************986 PP
2zf-C2H213.80.000184764219
                     EETTTTEEESSHHHHHHH CS
          zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                     kCp C+k++++ ++L+ H
  Zosma44g01450.1 47 KCPVCKKHCKSLESLREH 64
                     7***************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.6161746IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-51738IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801941IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MTEVESSDLS KLTSVRHKCP ACFKQYKRKE HLVEHVKHSN HSIHQPKCPV CKKHCKSLES  60
LREHAIGSLS KGCCAKAFID KGCSLCLDIF DTSYARNAHE KLCGLSPAHP VS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018847434.12e-37PREDICTED: apoptosis-enhancing nuclease
TrEMBLA0A0K9P3E48e-75A0A0K9P3E4_ZOSMR; Uncharacterized protein
STRINGXP_010278721.17e-35(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP214655