PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma44g00560.1
Common NameZOSMA_44G00560
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 341aa    MW: 36402.5 Da    PI: 7.1899
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma44g00560.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.25e-30111164155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Zosma44g00560.1 111 RPRLVWTPQLHKRFVDAVSHL-GIKHAVPKTIMQLMSVEGLTRENVASHLQKYRL 164
                      59*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.08E-19108168IPR009057Homeodomain-like
PROSITE profilePS5129410.073108167IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-30110169IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-24112164IPR006447Myb domain, plants
PfamPF002492.6E-7114163IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKEEESNWFP RWKEDELPSP EELMPLTQTL ITPDLALAFD IFQTPNSNIN RNLALQHHAP  60
NLSIGGGCVA EHESSEMGGG GGNSGGGGGG GGGGGGGGGG GGEEQARTLK RPRLVWTPQL  120
HKRFVDAVSH LGIKHAVPKT IMQLMSVEGL TRENVASHLQ KYRLYLKRMQ GISSGGVGSH  180
ASVSHSDEQL FASGPIPHHF LTQRPAPVGG GGGPDPFMPF VQVSALQQHH HHQMAAAAAA  240
AHHQQQQHHQ QQQQQQQQQF YHHRHIGSIG STTPNFEHHG NLVPRQAQQG GMQRMVGPLS  300
VGLMPTISSG VSGFGEDSDS GTVAGRDSRR VLTLFPTNDD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-32111167157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019447122.13e-87PREDICTED: transcription factor PCL1-like
SwissprotO222105e-57MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A0K9P0U00.0A0A0K9P0U0_ZOSMR; Response regulator 10
STRINGXP_008810430.17e-82(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05090.16e-53G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]