PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Zosma442g00020.1

Common Name

ZOSMA_442G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HB-other

Protein Properties

Length: 158aa MW: 18683.3 Da PI: 8.9633

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma442g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.1	2.3e-16	42	107	1	57
TT--SS--HHHHHHHHHH.........HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeel.........FeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+ ++++++q++ Le++ F+++ p+a++r L kkl+++ +qVk+WFqNrR+k+k+ Zosma442g00020.1 42 KRNYHRYNHDQIQNLEAYvgdlkphlmFKECTCPDANQRIILGKKLNMDSQQVKYWFQNRRMKMKN 107 67888999999999998555555555599***********************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.91E-16	27	108	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-18	37	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.216	39	108	IPR001356	Homeobox domain
SMART	SM00389	1.0E-9	41	112	IPR001356	Homeobox domain
Pfam	PF00046	8.2E-14	42	107	IPR001356	Homeobox domain
CDD	cd00086	2.09E-11	42	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MYSGSRLDDF DGQGHRLSRE VDTNVDQNSV VQYESMSCNE KKRNYHRYNH DQIQNLEAYV 60 GDLKPHLMFK ECTCPDANQR IILGKKLNMD SQQVKYWFQN RRMKMKNQLK NKENSVLKQQ 120 IDKLRHEKAL LIMEAMSKPC CAQCGYHPVY EKIYQKD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P3J6	1e-114	A0A0K9P3J6_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	5e-31	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Zosma442g00020.1