PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma440g00140.1
Common NameZOSMA_440G00140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 176aa    MW: 19697.2 Da    PI: 9.9866
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma440g00140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-173886355
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ykG+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aaka++ a  +l+g
  Zosma440g00140.1 38 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAIAAAKAYDIAVFCLRG 86
                      9*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-3737100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-303795IPR001471AP2/ERF domain
PROSITE profilePS5103222.4183794IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-203795IPR016177DNA-binding domain
PfamPF008472.2E-103886IPR001471AP2/ERF domain
CDDcd000181.62E-283895No hitNo description
PRINTSPR003672.6E-113849IPR001471AP2/ERF domain
PRINTSPR003672.6E-117696IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEETSSSTTT TTTTTKDFVL SPPSPTTMVS QKQQGRTYKG IRMRKWGKWV AEIREPNKRS  60
RIWLGSYSTA IAAAKAYDIA VFCLRGRSAR LNFPEEFKEE TVADFRHDMS AALIRKKATE  120
VGARVDAVEA AGNHLLLGPE QHFPTPLHHH HHHQKMKQKN PDLNQDPSPE SSSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1638971575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00020PBMTransfer from AT4G36900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019082291.12e-52PREDICTED: ethylene-responsive transcription factor ERF011-like
SwissprotQ9SW636e-44RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A0K9P1G21e-129A0A0K9P1G2_ZOSMR; Ethylene-responsive transcription factor
STRINGVIT_18s0001g10150.t016e-53(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.13e-39related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]