PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma43g00170.1
Common NameZOSMA_43G00170
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 770aa    MW: 87223.5 Da    PI: 5.7999
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma43g00170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-2049104156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +rk  +++++q++ LeelF+++++p+ e+r +L kk++++ rqVk+WFqNrR++ k
  Zosma43g00170.1  49 KRKYNRHSPHQIQYLEELFRECPHPDDEQRSQLGKKINMDRRQVKFWFQNRRTQLK 104
                      789999**********************************************9876 PP
2START156.12.9e-492614855206
                      HHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
            START   5 eaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                      +a +elvk+++ae p+W ++    e +n +e+   f++  +     + +ea ras  v   ++ lve+l+d++ +W  ++     ka+t++vis
  Zosma43g00170.1 261 AAVEELVKLVQAETPLWIQLDdftETLNFEEYGVAFPRLIGpkptgFVSEATRASSTVMISSTILVETLMDVN-RWVDMFScsitKASTTDVIS 353
                      6899*****************9999***********99888999999**************************.******************** PP

                      TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE...-TTS--...-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd...seqkppe..sssvvRaellpSgiliepksnghskvtwve 168
                       g      ga qlm a+lqalsplvp R+  f+R++++l +g+wv+vdvSvd   + ++p+   + s++ +++lpSg++i++ sng skvtwve
  Zosma43g00170.1 354 YGvsetrhGAFQLMRAQLQALSPLVPiREINFLRFSKKLAEGVWVVVDVSVDefiHGRDPSDdqQDSFMSCRKLPSGCVIQEFSNGQSKVTWVE 447
                      ***************************************************85546788887899***************************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      h++++++ +h+  rslv+sg ++ga++wv+tl+rqc++
  Zosma43g00170.1 448 HTEYDESNIHETCRSLVRSGSVFGANKWVSTLKRQCQT 485
                      ************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-1936100IPR009057Homeodomain-like
SuperFamilySSF466891.21E-1836104IPR009057Homeodomain-like
PROSITE profilePS5007117.29746106IPR001356Homeobox domain
SMARTSM003892.8E-1848110IPR001356Homeobox domain
PfamPF000461.0E-1749104IPR001356Homeobox domain
CDDcd000864.92E-1749106No hitNo description
PROSITE profilePS5084839.55248488IPR002913START domain
SuperFamilySSF559615.91E-27252485No hitNo description
CDDcd088751.16E-84252484No hitNo description
SMARTSM002349.0E-31257485IPR002913START domain
PfamPF018521.6E-41261485IPR002913START domain
SuperFamilySSF559611.3E-10504680No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MDATRSGLDD FERDDDDRIP TKDDFEEAAE SDEELNPDNN APSGSNSKKR KYNRHSPHQI  60
QYLEELFREC PHPDDEQRSQ LGKKINMDRR QVKFWFQNRR TQLKVQLDRH ENNMLRQDND  120
KLRAENMSLR KSMGKNDNCK HCNNLPMISE INLEQQQLRI ENSRLKEELN RVCSLSINYS  180
SHPIFQNNST TTTPEDPHPP HHHASSLTTP PMSSPPGAQP FISWQRFRSC PDMLTSSFQV  240
MDPITHRSMH KRSMYFELGM AAVEELVKLV QAETPLWIQL DDFTETLNFE EYGVAFPRLI  300
GPKPTGFVSE ATRASSTVMI SSTILVETLM DVNRWVDMFS CSITKASTTD VISYGVSETR  360
HGAFQLMRAQ LQALSPLVPI REINFLRFSK KLAEGVWVVV DVSVDEFIHG RDPSDDQQDS  420
FMSCRKLPSG CVIQEFSNGQ SKVTWVEHTE YDESNIHETC RSLVRSGSVF GANKWVSTLK  480
RQCQTLIFLI SPIISSVDLN SISQMGRRNL LKMAHRMTDS FYRGVCLSNH VWTEIKDNAR  540
SDIKVMTRKN FNNPGEPTGI VLNGASSVWL PVLHTRLFEY LHDEALRNDW DILSNGNPMQ  600
QIGFIAKGPD SGNHVSLIRG CAMDKGQPGM LILQETISDD SGSIVVYAPL DISAMHVVMN  660
GGDATNYIAL LPSGFAIVPN ITQVREDDNE DENEEEDRDN AERDLEKGKK IVVLSNKSER  720
VMGSILSMSF QILVNKDPTK QFSVDSIEIV KNLIDCTVKK VKAAMGLQV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278578.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
TrEMBLA0A0K9P3L70.0A0A0K9P3L7_ZOSMR; Homeobox-leucine zipper protein 3
STRINGXP_008232741.10.0(Prunus mume)
STRINGEMJ214550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1