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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma427g00050.1 | ||||||||
Common Name | ZOSMA_427G00050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NF-YB | ||||||||
Protein Properties | Length: 213aa MW: 22340.8 Da PI: 6.276 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 159.1 | 6.7e-50 | 61 | 153 | 5 | 97 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 d++lPianv+rimkk+lP+nakisk+aket+qec+sefisfv+seasdkc++e+rkt+ngdd++wa++tlGf+ +v+p+k yl+kyr+ e+++ Zosma427g00050.1 61 DQLLPIANVGRIMKKILPSNAKISKEAKETMQECASEFISFVASEASDKCNKERRKTVNGDDICWAFGTLGFDSFVQPMKRYLNKYRDYESKR 153 899*************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-46 | 60 | 164 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.77E-36 | 61 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-27 | 63 | 126 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 3.8E-17 | 91 | 109 | No hit | No description |
PRINTS | PR00615 | 3.8E-17 | 110 | 128 | No hit | No description |
PRINTS | PR00615 | 3.8E-17 | 129 | 147 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MLKSSSANEV RSGAYEKSDP SEQKMELIQV SNPCVRIIDG GSSSAAAETG GGGGGGGGGG 60 DQLLPIANVG RIMKKILPSN AKISKEAKET MQECASEFIS FVASEASDKC NKERRKTVNG 120 DDICWAFGTL GFDSFVQPMK RYLNKYRDYE SKRAAAAAAT AAAEATLFRH AGSGGGDDDH 180 NQDGSGDRHF KMDLAGPSDN NTTTLSFNVL GK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 8e-38 | 61 | 148 | 5 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 8e-38 | 61 | 148 | 5 | 92 | Transcription factor HapC (Eurofung) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020086005.1 | 3e-55 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | Q75IZ7 | 2e-45 | NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | A0A0K9P4I0 | 1e-155 | A0A0K9P4I0_ZOSMR; Nuclear transcription factor Y subunit B-5 | ||||
STRING | Aquca_017_00275.1 | 9e-53 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2917 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47810.1 | 8e-48 | nuclear factor Y, subunit B5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma427g00050.1 |
Publications ? help Back to Top | |||
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